RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SPSB2Q99619 263 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 NRTNQ99748 197 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 CRB3Q9BUF7 120 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 SOX17Q9H6I2 414 aaPredicted RBP16.24■□□□□ 0.19
VPS29-204ENST00000548259 LUC7LQ9NQ29 371 aaKnown RBP16.24■□□□□ 0.19
VPS29-204ENST00000548259 SLC22A11Q9NSA0 550 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 ZNHIT6Q9NWK9 470 aaKnown RBP16.24■□□□□ 0.19
VPS29-204ENST00000548259 SPHK1Q9NYA1 384 aa16.24■□□□□ 0.19
VPS29-204ENST00000548259 CCDC78A2IDD5 438 aa16.23■□□□□ 0.19
VPS29-204ENST00000548259 MAP2K7O14733 419 aa16.23■□□□□ 0.19
VPS29-204ENST00000548259 ACPPP15309 386 aa16.23■□□□□ 0.19
VPS29-204ENST00000548259 SSTR2P30874 369 aa16.23■□□□□ 0.19
VPS29-204ENST00000548259 MC4RP32245 332 aa16.23■□□□□ 0.19
VPS29-204ENST00000548259 OCA2Q04671 838 aa16.23■□□□□ 0.19
VPS29-204ENST00000548259 SERPINA9Q86WD7 417 aa16.23■□□□□ 0.19
VPS29-204ENST00000548259 ELMO1Q92556 727 aa16.23■□□□□ 0.19
VPS29-204ENST00000548259 ALS2CR12Q96Q35 445 aa16.23■□□□□ 0.19
VPS29-204ENST00000548259 CUTCQ9NTM9 273 aa16.23■□□□□ 0.19
VPS29-204ENST00000548259 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.23■□□□□ 0.19
VPS29-204ENST00000548259 CCDC168Q8NDH2 2452 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 CNTRLQ7Z7A1 2325 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 H7C0C1 242 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 RPN2P04844 631 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 CTSBP07858 339 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 SNRPB2P08579 225 aaKnown RBP16.22■□□□□ 0.19
VPS29-204ENST00000548259 CAPN3P20807 821 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 PBX1P40424 430 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 NSG1P42857 185 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 ATP5OP48047 213 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 ZNF140P52738 457 aaPredicted RBP16.22■□□□□ 0.19
VPS29-204ENST00000548259 SMSP52788 366 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 AP2B1P63010 937 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 ZNF658BQ4V348 819 aaPredicted RBP16.22■□□□□ 0.19
VPS29-204ENST00000548259 CCDC181Q5TID7 509 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 ZNF324BQ6AW86 544 aaPredicted RBP16.22■□□□□ 0.19
VPS29-204ENST00000548259 NLRP9Q7RTR0 991 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 CLDN19Q8N6F1 224 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 CATSPER1Q8NEC5 780 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 DNAJB8Q8NHS0 232 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 CCDC120Q96HB5 630 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 APOL2Q9BQE5 337 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.22■□□□□ 0.19
VPS29-204ENST00000548259 SMARCAL1Q9NZC9 954 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 SEC14L3Q9UDX4 400 aa16.22■□□□□ 0.19
VPS29-204ENST00000548259 MRPS2Q9Y399 296 aaKnown RBP16.22■□□□□ 0.19
VPS29-204ENST00000548259 PDZD2O15018 2839 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 SVILO95425 2214 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 CELSR1Q9NYQ6 3014 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 PSTPIP1O43586 416 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 UNC5CO95185 931 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 ZRANB2O95218 330 aaKnown RBP eCLIP16.21■□□□□ 0.191e-7■■■■□ 19.3
VPS29-204ENST00000548259 GYPCP04921 128 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 TPM3P06753 285 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 MAGP20916 626 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 RAB28P51157 221 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 TDGF1P3P51864 188 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 TAZQ16635 292 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 SHISA6Q6ZSJ9 500 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 CCDC50Q8IVM0 306 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 FLVCR1-AS1Q8TAF5 88 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 HAS2Q92819 552 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 HAUS1Q96CS2 278 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 ZNF160Q9HCG1 818 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 ABI3Q9P2A4 366 aa16.21■□□□□ 0.19
VPS29-204ENST00000548259 NSG1A0A0A6YYJ2 146 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 TRBV5-4A0A0C4DH59 114 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 H7C0S8 307 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 KLHL18O94889 574 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 RASAL1O95294 804 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 OR56A5P0C7T3 313 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 ESRRAP11474 423 aaPredicted RBP16.2■□□□□ 0.18
VPS29-204ENST00000548259 AGAP20933 346 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 CXCR2P25025 360 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 ACADLP28330 430 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 ADRA1AP35348 466 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 CA7P43166 264 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 TNFSF10P50591 281 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 CACNG1Q06432 222 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 BRD3Q15059 726 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 KRTAP21-3Q3LHN1 58 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 DNAJC21Q5F1R6 531 aaKnown RBP16.2■□□□□ 0.18
VPS29-204ENST00000548259 PRMT9Q6P2P2 845 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 RCOR2Q8IZ40 523 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 MIEF2Q96C03 454 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 TTC1Q99614 292 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 SELENOSQ9BQE4 189 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 PTGFRNQ9P2B2 879 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 CTSFQ9UBX1 484 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 ZNF282Q9UDV7 671 aaPredicted RBP16.2■□□□□ 0.18
VPS29-204ENST00000548259 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.2■□□□□ 0.18
VPS29-204ENST00000548259 FAM169AQ9Y6X4 670 aa16.2■□□□□ 0.18
VPS29-204ENST00000548259 MDC1Q14676 2089 aaKnown RBP16.2■□□□□ 0.18
VPS29-204ENST00000548259 VSTM2BA6NLU5 285 aa16.19■□□□□ 0.18
VPS29-204ENST00000548259 SRPX2O60687 465 aaPredicted RBP16.19■□□□□ 0.18
VPS29-204ENST00000548259 ZNF189O75820 626 aaPredicted RBP16.19■□□□□ 0.18
VPS29-204ENST00000548259 WFS1O76024 890 aa16.19■□□□□ 0.18
VPS29-204ENST00000548259 FKBP9O95302 570 aa16.19■□□□□ 0.18
VPS29-204ENST00000548259 MLYCDO95822 493 aa16.19■□□□□ 0.18
VPS29-204ENST00000548259 S1PR4O95977 384 aa16.19■□□□□ 0.18
VPS29-204ENST00000548259 COMTP21964 271 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms