RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	SKIDA1	Q1XH10	827 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	ZNF658B	Q4V348	819 aa	Predicted RBP	7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	ZRANB3	Q5FWF4	1079 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	PCSK4	Q6UW60	755 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	C4orf22	Q6V702	233 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	PACS1	Q6VY07	963 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	PPP1R21	Q6ZMI0	780 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	VASH2	Q86V25	355 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	SERPINA9	Q86WD7	417 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	DNAAF3	Q8N9W5	541 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	BVES	Q8NE79	360 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	OR52K1	Q8NGK4	314 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	THAP3	Q8WTV1	239 aa	Predicted RBP	7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	MAIP1	Q8WWC4	291 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	C1orf54	Q8WWF1	131 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	CDKN2AIPNL	Q96HQ2	116 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	RMDN2	Q96LZ7	410 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	C12orf66	Q96MD2	445 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	TGM7	Q96PF1	710 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	RANBP9	Q96S59	729 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	CD180	Q99467	661 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	CCM2	Q9BSQ5	444 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	SPATA9	Q9BWV2	254 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	TLR10	Q9BXR5	811 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	KLHL25	Q9H0H3	589 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	WWP1	Q9H0M0	922 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	KIR3DX1	Q9H7L2	352 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	COG4	Q9H9E3	785 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	PIH1D1	Q9NWS0	290 aa	Known RBP	7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	SEMA5B	Q9P283	1151 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	PILRA	Q9UKJ1	303 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	RIMKLB	Q9ULI2	386 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	PSMD13	Q9UNM6	376 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	PPP2R2C	Q9Y2T4	447 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	ZNF451	Q9Y4E5	1061 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	TMEM184B	Q9Y519	407 aa	Predicted RBP	7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	HEBP2	Q9Y5Z4	205 aa		7.48	□□□□□ -1.21
SNHG1-223	ENST00000545440	TLN1	Q9Y490	2541 aa	Known RBP	7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	SPTA1	P02549	2419 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	OR5K3	A6NET4	321 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	GOLGA6L3	A6NEY3	463 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	TLCD2	A6NGC4	264 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	MATN2	O00339	956 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	POLR1C	O15160	346 aa	Predicted RBP	7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	RAD1	O60671	282 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	RASSF9	O75901	435 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	C1QL1	O75973	258 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	STK17B	O94768	372 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	FGG	P02679	453 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	APRT	P07741	180 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	TPH1	P17752	444 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	ENDOU	P21128	410 aa	Known RBP	7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	MSN	P26038	577 aa	Known RBP	7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	FOXN2	P32314	431 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	CD151	P48509	253 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	LMAN1	P49257	510 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	CDKN1C	P49918	316 aa	Predicted RBP	7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	POU4F1	Q01851	419 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	ACVR1	Q04771	509 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	RPA4	Q13156	261 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	SRSF6	Q13247	344 aa	Known RBP	7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	SNX1	Q13596	522 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	IL11RA	Q14626	422 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	TAF1B	Q53T94	588 aa	Predicted RBP	7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	CACHD1	Q5VU97	1274 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	KIAA1614	Q5VZ46	1190 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	CAPRIN2	Q6IMN6	1127 aa	Known RBP	7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	IRGC	Q6NXR0	463 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	DUS1L	Q6P1R4	473 aa	Known RBP	7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	AFTPH	Q6ULP2	937 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	FAM92B	Q6ZTR7	304 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	NLRP9	Q7RTR0	991 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	OOSP2	Q86WS3	158 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	KMT5C	Q86Y97	462 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	PIANP	Q8IYJ0	282 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	CACNA2D3	Q8IZS8	1091 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	NLGN4X	Q8N0W4	816 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	CARF	Q8N187	725 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	GLIS1	Q8NBF1	620 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	NLGN4Y	Q8NFZ3	816 aa	Predicted RBP	7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	OR13J1	Q8NGT2	312 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	RCC1L	Q96I51	464 aa	Known RBP	7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	SPRY4	Q9C004	299 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	PRDM14	Q9GZV8	571 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	OR52A5	Q9H2C5	316 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	FAM96A	Q9H5X1	160 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	APMAP	Q9HDC9	416 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	CASS4	Q9NQ75	786 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	HOMER3	Q9NSC5	361 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	GFOD1	Q9NXC2	390 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	SLC24A2	Q9UI40	661 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	DRG1	Q9Y295	367 aa	Known RBP	7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	TCAF1	Q9Y4C2	921 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	CFAP20	Q9Y6A4	193 aa	Known RBP	7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	COLEC10	Q9Y6Z7	277 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	MED13	Q9UHV7	2174 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	PIEZO2	Q9H5I5	2752 aa		7.47	□□□□□ -1.21
SNHG1-223	ENST00000545440	CCDC162P	A2VCL2	907 aa		7.46	□□□□□ -1.22
SNHG1-223	ENST00000545440		F8W8V4	182 aa		7.46	□□□□□ -1.22

Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms