RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 L3MBTL4Q8NA19 623 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 FNDC5Q8NAU1 212 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 KYQ8NBH2 561 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 OR56A3Q8NH54 315 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 HMGB4Q8WW32 186 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 ZNF514Q96K75 400 aaPredicted RBP11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 CCDC138Q96M89 665 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 ACPTQ9BZG2 426 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 FBRSQ9HAH7 460 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 GMPR2Q9P2T1 348 aaKnown RBP11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 PNMA8BQ9ULN7 279 aaPredicted RBP11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 CA14Q9ULX7 337 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 WDR37Q9Y2I8 494 aa11.92□□□□□ -0.5
AP003559.1-201ENST00000540906 CFLARO15519 480 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 VPS4BO75351 444 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 KRT36O76013 467 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 SNRPB2P08579 225 aaKnown RBP11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 CHRNB1P11230 501 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 G6PDP11413 515 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 SRFP11831 508 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 MYCLP1P12525 358 aaPredicted RBP11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 ACP5P13686 325 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 VARSP26640 1264 aaKnown RBP11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 RPL10P27635 214 aaKnown RBP11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 MNAT1P51948 309 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 ERVK-8P63133 956 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 CHIT1Q13231 466 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 E2F5Q15329 346 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 ZRSR2Q15696 482 aaKnown RBP11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 AP5B1Q2VPB7 878 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 VPS26BQ4G0F5 336 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 WASHC2DQ5SRD0 308 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 LAYNQ6UX15 382 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 CHST15Q7LFX5 561 aaPredicted RBP11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 SPATA19Q7Z5L4 167 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 PDZD3Q86UT5 571 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 C2orf73Q8N5S3 287 aaPredicted RBP11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 APOOQ9BUR5 198 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 SLC29A3Q9BZD2 475 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 FGF22Q9HCT0 170 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 PREBQ9HCU5 417 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 SLC2A4RGQ9NR83 387 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 FZD4Q9ULV1 537 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 KCNK6Q9Y257 313 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 L3MBTL1Q9Y468 752 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 POLR3HQ9Y535 204 aaPredicted RBP11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 TRIOO75962 3097 aa11.91□□□□□ -0.5
AP003559.1-201ENST00000540906 ANKRD28O15084 1053 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 WFS1O76024 890 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 MSX2P35548 267 aaPredicted RBP11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 HALP42357 657 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 ACADVLP49748 655 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 STX1BP61266 288 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 TBPL1P62380 186 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 PRKG2Q13237 762 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 TDGQ13569 410 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 DOC2AQ14183 400 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 TCEA2Q15560 299 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 MLF2Q15773 248 aaPredicted RBP11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 SNCBQ16143 134 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 GSTA3Q16772 222 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 GGTA1PQ4G0N0 100 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 ATP6AP1LQ52LC2 224 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 EOGTQ5NDL2 527 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 IL23RQ5VWK5 629 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 METRNLQ641Q3 311 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 SUSD1Q6UWL2 747 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 USP30Q70CQ3 517 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 TRIM46Q7Z4K8 759 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 RNF148Q8N7C7 305 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 FRMD1Q8N878 549 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 FBXO15Q8NCQ5 510 aaPredicted RBP11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 CCDC124Q96CT7 223 aaKnown RBP11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 FOPNLQ96NB1 174 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 SLC39A3Q9BRY0 314 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 BRINP2Q9C0B6 783 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 DPEP2Q9H4A9 486 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 WDR41Q9HAD4 459 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 PHPT1Q9NRX4 125 aaPredicted RBP11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 RIC8BQ9NVN3 520 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 MAP10Q9P2G4 905 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 SUFUQ9UMX1 484 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 SLC17A4Q9Y2C5 497 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 PCDHGA7Q9Y5G6 932 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 PRAMEF33A0A0G2JMD5 474 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 PABPN1LA6NDY0 278 aaKnown RBP11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 PRR19A6NJB7 356 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 C10orf142B7Z368 130 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 H0Y3Z8 333 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 MRASO14807 208 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 NRP2O60462 931 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 ULK1O75385 1050 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 IDO1P14902 403 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 GLULP15104 373 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 MRPL19P49406 292 aaKnown RBP11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 THOP1P52888 689 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 RPL38P63173 70 aaKnown RBP11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 EMX2Q04743 252 aa11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 TSTA3Q13630 321 aaPredicted RBP11.9□□□□□ -0.5
AP003559.1-201ENST00000540906 CEACAM7Q14002 265 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms