RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 PRKAA2P54646 552 aa18.36■□□□□ 0.53
TNFRSF1A-213ENST00000540022 GYS2P54840 703 aa18.36■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ALDH18A1P54886 795 aaKnown RBP18.36■□□□□ 0.53
TNFRSF1A-213ENST00000540022 SETDB1Q15047 1291 aa18.36■□□□□ 0.53
TNFRSF1A-213ENST00000540022 NUDCD3Q8IVD9 361 aa18.36■□□□□ 0.53
TNFRSF1A-213ENST00000540022 KYQ8NBH2 561 aa18.36■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ZNF480Q8WV37 535 aa18.36■□□□□ 0.53
TNFRSF1A-213ENST00000540022 JPH3Q8WXH2 748 aaPredicted RBP18.36■□□□□ 0.53
TNFRSF1A-213ENST00000540022 CCDC126Q96EE4 140 aa18.36■□□□□ 0.53
TNFRSF1A-213ENST00000540022 MOCOSQ96EN8 888 aa18.36■□□□□ 0.53
TNFRSF1A-213ENST00000540022 TMEM9BQ9NQ34 198 aa18.36■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ACSS2Q9NR19 701 aa18.36■□□□□ 0.53
TNFRSF1A-213ENST00000540022 TMCO1Q9UM00 188 aa18.36■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ASB1Q9Y576 335 aa18.36■□□□□ 0.53
TNFRSF1A-213ENST00000540022 STX16-NPEPL1H3BU86 382 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 STX16O14662 325 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 FASLGP48023 281 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 HHEXQ03014 270 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 GPR18Q14330 331 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 C14orf28Q4W4Y0 310 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 AGTRAPQ6RW13 159 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 TAX1BP1Q86VP1 789 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 SLC22A9Q8IVM8 553 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 SLC35F3Q8IY50 421 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 PPFIBP2Q8ND30 876 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 OR4C6Q8NH72 309 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 TMEM237Q96Q45 408 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 DUSP23Q9BVJ7 150 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ATG10Q9H0Y0 220 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 XKR8Q9H6D3 395 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 DNAAF2Q9NVR5 837 aaKnown RBP18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 WWOXQ9NZC7 414 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ICKQ9UPZ9 632 aa18.35■□□□□ 0.53
TNFRSF1A-213ENST00000540022 PPM1DO15297 605 aa18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 POLR3GO15318 223 aaPredicted RBP18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 TRIM13O60858 407 aa18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ERGP11308 486 aa18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 FGF3P11487 239 aaPredicted RBP18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 GDF5P43026 501 aa18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 HSPA7P48741 367 aa18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 HNMTP50135 292 aa18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 DNAJB13P59910 316 aa18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 LIPMQ5VYY2 423 aa18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ZCCHC23Q6ZST2 131 aa18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 TCAIMQ8N3R3 496 aa18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ARL10Q8N8L6 244 aa18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ZFPM2Q8WW38 1151 aa18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ATL1Q8WXF7 558 aa18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 SPATA7Q9P0W8 599 aa18.34■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ZNF883P0CG24 379 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ALPPL2P10696 532 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 TPRP12270 2363 aaKnown RBP18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 MYF5P13349 255 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 IMPDH1P20839 514 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 BGNP21810 368 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 EEF1DP29692 281 aaKnown RBP18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 PKLRP30613 574 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 GGT5P36269 586 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 PNLIPRP1P54315 467 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 NAGLUP54802 743 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 HERVK_113P63132 956 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 GUCY1A3Q02108 690 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 FASTKQ14296 549 aaKnown RBP18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 PCBP2Q15366 365 aaKnown RBP eCLIP18.33■□□□□ 0.538e-7■■■■□ 21.8
TNFRSF1A-213ENST00000540022 PTCHD3Q3KNS1 767 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ZNF678Q5SXM1 525 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ZCCHC8Q6NZY4 707 aaKnown RBP18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 RPS27LQ71UM5 84 aaKnown RBP18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 RAB44Q7Z6P3 723 aaPredicted RBP18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ZNF761Q86XN6 746 aaPredicted RBP18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 LRRC56Q8IYG6 542 aaPredicted RBP18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 EID2Q8N6I1 236 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 LINC01555Q8NAE3 123 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 UBTD2Q8WUN7 234 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 DYDC1Q8WWB3 177 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 PYCR2Q96C36 320 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 L3HYPDHQ96EM0 354 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 GATA5Q9BWX5 397 aaPredicted RBP18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 ERVK-6Q9BXR3 956 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 CD244Q9BZW8 370 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 LNPEPQ9UIQ6 1025 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 BTBD3Q9Y2F9 522 aa18.33■□□□□ 0.53
TNFRSF1A-213ENST00000540022 E7ENX8 843 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SIGLEC6O43699 453 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 RPS17P08708 135 aaKnown RBP18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 NEFHP12036 1026 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 MDH1P40925 334 aaKnown RBP18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 SLC6A12P48065 614 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 RAB28P51157 221 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 TAP2Q03519 686 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 NAE1Q13564 534 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 ARHGAP19Q14CB8 494 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 CHI3L2Q15782 390 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 CYP2A13Q16696 494 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 UNC50Q53HI1 259 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 CES4AQ5XG92 561 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 ANKS6Q68DC2 871 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 TMEM26Q6ZUK4 368 aa18.33■□□□□ 0.52
TNFRSF1A-213ENST00000540022 RBM12BQ8IXT5 1001 aaKnown RBP18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms