RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 ZC3H12BQ5HYM0 836 aaKnown RBP12.64□□□□□ -0.39
RTN3-207ENST00000536011 RNF187Q5TA31 235 aaPredicted RBP12.64□□□□□ -0.39
RTN3-207ENST00000536011 MEI1Q5TIA1 1274 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 VWA5B1Q5TIE3 1220 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 C1orf189Q5VU69 101 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 YOD1Q5VVQ6 348 aaPredicted RBP12.64□□□□□ -0.39
RTN3-207ENST00000536011 CLEC18BQ6UXF7 455 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 NAPRTQ6XQN6 538 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 MICALCLQ6ZW33 695 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 ZNF534Q76KX8 674 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 MRGPREQ86SM8 312 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 GAS2L3Q86XJ1 694 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 ZBTB2Q8N680 514 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 OTUD6BQ8N6M0 293 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 ZNF655Q8N720 491 aaPredicted RBP12.64□□□□□ -0.39
RTN3-207ENST00000536011 CLEC18CQ8NCF0 446 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 FDCSPQ8NFU4 85 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 OR2Y1Q8NGV0 311 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 CFAP61Q8NHU2 1237 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 FLVCR1-AS1Q8TAF5 88 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 ZNF778Q96MU6 729 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 FOPNLQ96NB1 174 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 GBP5Q96PP8 586 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 SLC29A3Q9BZD2 475 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 SLAMF7Q9NQ25 335 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 HOMER3Q9NSC5 361 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.64□□□□□ -0.39
RTN3-207ENST00000536011 C5AR2Q9P296 337 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 PLAGL1Q9UM63 463 aa12.64□□□□□ -0.39
RTN3-207ENST00000536011 PTRH2Q9Y3E5 179 aaKnown RBP12.64□□□□□ -0.39
RTN3-207ENST00000536011 SEC16AO15027 2179 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 A6NL46 340 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 H3BMH7 237 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 RASGRF2O14827 1237 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 KLF7O75840 302 aaPredicted RBP12.63□□□□□ -0.39
RTN3-207ENST00000536011 IPO13O94829 963 aaKnown RBP12.63□□□□□ -0.39
RTN3-207ENST00000536011 SLCO2B1O94956 709 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 CCDC175P0C221 793 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 CBSLP0DN79 551 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 MAGP20916 626 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 RPL22P35268 128 aaKnown RBP12.63□□□□□ -0.39
RTN3-207ENST00000536011 CBSP35520 551 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 CCNFP41002 786 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 GABRA4P48169 554 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 NPY2RP49146 381 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 SESN2P58004 480 aaPredicted RBP12.63□□□□□ -0.39
RTN3-207ENST00000536011 CDK16Q00536 496 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 NAA25Q14CX7 972 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 CYP2A13Q16696 494 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 TCTE1Q5JU00 501 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 ARMC3Q5W041 872 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 MRNIPQ6NTE8 343 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 OTOAQ7RTW8 1153 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 SDCCAG8Q86SQ7 713 aaPredicted RBP12.63□□□□□ -0.39
RTN3-207ENST00000536011 DNAJC22Q8N4W6 341 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 OR2L8Q8NGY9 312 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 MAGEC3Q8TD91 643 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 SKA2Q8WVK7 121 aaPredicted RBP12.63□□□□□ -0.39
RTN3-207ENST00000536011 TM9SF4Q92544 642 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 FKBP10Q96AY3 582 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 RAD51AP1Q96B01 352 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 NACC2Q96BF6 587 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 SPRTNQ9H040 489 aaPredicted RBP12.63□□□□□ -0.39
RTN3-207ENST00000536011 CHRAC1Q9NRG0 131 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 EURLQ9NYK6 297 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 CDYLQ9Y232 598 aa12.63□□□□□ -0.39
RTN3-207ENST00000536011 DRG1Q9Y295 367 aaKnown RBP12.63□□□□□ -0.39
RTN3-207ENST00000536011 USP9YO00507 2555 aaPredicted RBP12.62□□□□□ -0.39
RTN3-207ENST00000536011 USP9XQ93008 2570 aaPredicted RBP12.62□□□□□ -0.39
RTN3-207ENST00000536011 A0A1B0GX78 115 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 H3BMM5 538 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 NRDCO43847 1150 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 SORBS2O94875 1100 aaKnown RBP12.62□□□□□ -0.39
RTN3-207ENST00000536011 TPBGLP0DKB5 382 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 ETS1P14921 441 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 RPS3P23396 243 aaKnown RBP eCLIP12.62□□□□□ -0.391e-6■■■■□ 21.3
RTN3-207ENST00000536011 PEBP1P30086 187 aaKnown RBP12.62□□□□□ -0.39
RTN3-207ENST00000536011 SARNPP82979 210 aaKnown RBP12.62□□□□□ -0.39
RTN3-207ENST00000536011 SRSF1Q07955 248 aaKnown RBP eCLIP12.62□□□□□ -0.392e-7■■□□□ 13.4
RTN3-207ENST00000536011 SEMA3AQ14563 771 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 SF1Q15637 639 aaKnown RBP12.62□□□□□ -0.39
RTN3-207ENST00000536011 NADK2Q4G0N4 442 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 FAM69BQ5VUD6 431 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 JMJD6Q6NYC1 403 aaPredicted RBP12.62□□□□□ -0.39
RTN3-207ENST00000536011 VRK3Q8IV63 474 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 TRIM58Q8NG06 486 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 PNPLA2Q96AD5 504 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 PTERQ96BW5 349 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 VPS50Q96JG6 964 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 SMAD5Q99717 465 aaKnown RBP12.62□□□□□ -0.39
RTN3-207ENST00000536011 NUDT9Q9BW91 350 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 MRM3Q9HC36 420 aaKnown RBP12.62□□□□□ -0.39
RTN3-207ENST00000536011 TREX1Q9NSU2 369 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 DHCR7Q9UBM7 475 aaKnown RBP12.62□□□□□ -0.39
RTN3-207ENST00000536011 VPS9D1Q9Y2B5 631 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 FAM169AQ9Y6X4 670 aa12.62□□□□□ -0.39
RTN3-207ENST00000536011 IQCF5A8MTL0 148 aa12.61□□□□□ -0.39
RTN3-207ENST00000536011 TARM1B6A8C7 271 aa12.61□□□□□ -0.39
RTN3-207ENST00000536011 FGGP02679 453 aa12.61□□□□□ -0.39
RTN3-207ENST00000536011 ZSCAN5DPP0CG00 497 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms