RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SNAP29O95721 258 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 PRPS2P11908 318 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 RPL10P27635 214 aaKnown RBP11.45□□□□□ -0.58
SYNPO-204ENST00000519664 UGT2B15P54855 530 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 PIGFQ07326 219 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 OR4D1Q15615 310 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 UAP1L1Q3KQV9 507 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-204ENST00000519664 ISCA2Q86U28 154 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 AKAP14Q86UN6 197 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 SLC15A3Q8IY34 581 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 ZNF599Q96NL3 588 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 PSKH2Q96QS6 385 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 FAIM2Q9BWQ8 316 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 ZDHHC4Q9NPG8 344 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 AASDHPPTQ9NRN7 309 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 DNAJB9Q9UBS3 223 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 ASB3Q9Y575 518 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 GRID2O43424 1007 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 HTRA2O43464 458 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-204ENST00000519664 DFNA5O60443 496 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 GJB3O75712 270 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 ENGP17813 658 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 RXRGP48443 463 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 ADAM17P78536 824 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 SCAPQ12770 1279 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 RFTN1Q14699 578 aaPredicted RBP11.45□□□□□ -0.58
SYNPO-204ENST00000519664 CYP27C1Q4G0S4 372 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 FGD2Q7Z6J4 655 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 SYVN1Q86TM6 617 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 PHYKPLQ8IUZ5 450 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 SLC9A6Q92581 669 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 YIPF4Q9BSR8 244 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 DERL2Q9GZP9 239 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 SLCO3A1Q9UIG8 710 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 PCDHGA11Q9Y5H2 935 aa11.45□□□□□ -0.58
SYNPO-204ENST00000519664 ZNF623O75123 536 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 PORP16435 677 aaPredicted RBP11.44□□□□□ -0.58
SYNPO-204ENST00000519664 ZNF33AQ06730 810 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 ZBTB6Q15916 424 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 MEP1AQ16819 746 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 FRG2Q64ET8 278 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 CYS1Q717R9 158 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 ERMP1Q7Z2K6 904 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 KRTCAP2Q8N6L1 136 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 OR14C36Q8NHC7 312 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 FRG2BQ96QU4 278 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 IL4I1Q96RQ9 567 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 WDR12Q9GZL7 423 aaKnown RBP11.44□□□□□ -0.58
SYNPO-204ENST00000519664 FBXW2Q9UKT8 454 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 CACNA1CQ13936 2221 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 TRIM64CA6NLI5 447 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 PER2O15055 1255 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 CTSEP14091 401 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 CAPZA2P47755 286 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 IST1P53990 364 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 RPL26P61254 145 aaKnown RBP11.44□□□□□ -0.58
SYNPO-204ENST00000519664 SUSD1Q6UWL2 747 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 PAQR9Q6ZVX9 377 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 CHMP1BQ7LBR1 199 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 DHRS4Q9BTZ2 278 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 SERHL2Q9H4I8 314 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 MOV10Q9HCE1 1003 aaKnown RBP11.44□□□□□ -0.58
SYNPO-204ENST00000519664 TRIM39Q9HCM9 518 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 SERHLQ9NQF3 203 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 CCDC177Q9NQR7 707 aaPredicted RBP11.44□□□□□ -0.58
SYNPO-204ENST00000519664 HCSTQ9UBK5 93 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 VPS29Q9UBQ0 182 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 UGT2B11O75310 529 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 IFNA16P05015 189 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 IL12RB1P42701 662 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 ASMTP46597 345 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 DGKGP49619 791 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 EEFSECP57772 596 aaKnown RBP11.44□□□□□ -0.58
SYNPO-204ENST00000519664 RAB14P61106 215 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 MEF2AQ02078 507 aaPredicted RBP11.44□□□□□ -0.58
SYNPO-204ENST00000519664 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.44□□□□□ -0.58
SYNPO-204ENST00000519664 FCHO2Q0JRZ9 810 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 MTAPQ13126 283 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 ZNF648Q5T619 568 aaPredicted RBP11.44□□□□□ -0.58
SYNPO-204ENST00000519664 GALNT10Q86SR1 603 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 P2RY8Q86VZ1 359 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 TCAIMQ8N3R3 496 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.44□□□□□ -0.58
SYNPO-204ENST00000519664 FAR1Q8WVX9 515 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 SLC32A1Q9H598 525 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 C11orf16Q9NQ32 467 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 SEMA3GQ9NS98 782 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 DUS2Q9NX74 493 aaKnown RBP11.44□□□□□ -0.58
SYNPO-204ENST00000519664 MKS1Q9NXB0 559 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 PTGFRNQ9P2B2 879 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 ZNF624Q9P2J8 865 aaPredicted RBP11.44□□□□□ -0.58
SYNPO-204ENST00000519664 CLEC4AQ9UMR7 237 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 ZNF510Q9Y2H8 683 aa11.44□□□□□ -0.58
SYNPO-204ENST00000519664 KDELR3O43731 214 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 ADH1CP00326 375 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 RYKP34925 604 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 FOXA1P55317 472 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 ZSWIM7Q19AV6 140 aa11.43□□□□□ -0.58
SYNPO-204ENST00000519664 KLHL17Q6TDP4 642 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms