RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 FNTAP49354 379 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 GTF2A1P52655 376 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-215ENST00000519474 POLE2P56282 527 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 RPS18P62269 152 aaKnown RBP9.01□□□□□ -0.97
HDAC3-215ENST00000519474 NFKB2Q00653 900 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 CTBP1Q13363 440 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 KIR2DS3Q14952 304 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 SLC5A12Q1EHB4 618 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 CCSMST1Q4G0I0 132 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 RNASEH2BQ5TBB1 312 aaKnown RBP9.01□□□□□ -0.97
HDAC3-215ENST00000519474 ZNF385CQ66K41 422 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-215ENST00000519474 CASC4Q6P4E1 433 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 ZNF549Q6P9A3 640 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 UNC5DQ6UXZ4 953 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 CYHR1Q6ZMK1 362 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 OTOAQ7RTW8 1153 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 CREG2Q8IUH2 290 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 DENND6AQ8IWF6 608 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 PPIL6Q8IXY8 311 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 OR2L8Q8NGY9 312 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 MR1Q95460 341 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 RAD51AP1Q96B01 352 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 ABHD17AQ96GS6 310 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 SLC30A3Q99726 388 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 DDX47Q9H0S4 455 aaKnown RBP9.01□□□□□ -0.97
HDAC3-215ENST00000519474 XAB2Q9HCS7 855 aaKnown RBP9.01□□□□□ -0.97
HDAC3-215ENST00000519474 PCMTD2Q9NV79 361 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 CHCHD3Q9NX63 227 aaKnown RBP9.01□□□□□ -0.97
HDAC3-215ENST00000519474 PCYOX1Q9UHG3 505 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 FBXO9Q9UK97 447 aaPredicted RBP9.01□□□□□ -0.97
HDAC3-215ENST00000519474 PYCARDQ9ULZ3 195 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 KLHL20Q9Y2M5 609 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 MED16Q9Y2X0 877 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 IGSF10Q6WRI0 2623 aa9.01□□□□□ -0.97
HDAC3-215ENST00000519474 CDC14CA4D256 554 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 K7EM74 188 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 RASGRF2O14827 1237 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 MAP3K7O43318 606 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 SUV39H1O43463 412 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 KDM1AO60341 852 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 USP1O94782 785 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 ESR1P03372 595 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 RAB40ALP0C0E4 278 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 TCP1P17987 556 aaKnown RBP9□□□□□ -0.97
HDAC3-215ENST00000519474 PAMP19021 973 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 GRIA3P42263 894 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 RAB28P51157 221 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 GYS2P54840 703 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 ITGA1P56199 1179 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 RPS15P62841 145 aaKnown RBP9□□□□□ -0.97
HDAC3-215ENST00000519474 KCNAB2Q13303 367 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 KLHL38Q2WGJ6 581 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 MSS51Q4VC12 460 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 ACSBG2Q5FVE4 666 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 IZUMO3Q5VZ72 239 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 FCRL6Q6DN72 434 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 TTC23LQ6PF05 361 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 FIGLAQ6QHK4 219 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 HOOK3Q86VS8 718 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 MCATQ8IVS2 390 aaKnown RBP9□□□□□ -0.97
HDAC3-215ENST00000519474 IGDCC3Q8IVU1 814 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 DCUN1D3Q8IWE4 304 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 C19orf47Q8N9M1 422 aaKnown RBP9□□□□□ -0.97
HDAC3-215ENST00000519474 DENND1AQ8TEH3 1009 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 GRK7Q8WTQ7 553 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 SLCO2A1Q92959 643 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 ZNF669Q96BR6 464 aaPredicted RBP9□□□□□ -0.97
HDAC3-215ENST00000519474 FAM136AQ96C01 138 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 CLIP3Q96DZ5 547 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 NLNQ9BYT8 704 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 ACTL8Q9H568 366 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 ACTR5Q9H9F9 607 aaPredicted RBP9□□□□□ -0.97
HDAC3-215ENST00000519474 SLC24A3Q9HC58 644 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 INTS10Q9NVR2 710 aaKnown RBP9□□□□□ -0.97
HDAC3-215ENST00000519474 SAMD15Q9P1V8 674 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 TUBD1Q9UJT1 453 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 SLC39A10Q9ULF5 831 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 PLCL2Q9UPR0 1127 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 RUVBL2Q9Y230 463 aaKnown RBP9□□□□□ -0.97
HDAC3-215ENST00000519474 DHRS7Q9Y394 339 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 ITPR1Q14643 2758 aa9□□□□□ -0.97
HDAC3-215ENST00000519474 A0A1W2PPV9 198 aa8.99□□□□□ -0.97
HDAC3-215ENST00000519474 KRT87PA6NCN2 255 aa8.99□□□□□ -0.97
HDAC3-215ENST00000519474 E7EQ34 232 aa8.99□□□□□ -0.97
HDAC3-215ENST00000519474 H3BMM5 538 aa8.99□□□□□ -0.97
HDAC3-215ENST00000519474 J3QKU1 62 aa8.99□□□□□ -0.97
HDAC3-215ENST00000519474 DNALI1O14645 258 aaPredicted RBP8.99□□□□□ -0.97
HDAC3-215ENST00000519474 PFDN6O15212 129 aa8.99□□□□□ -0.97
HDAC3-215ENST00000519474 FANCGO15287 622 aa8.99□□□□□ -0.97
HDAC3-215ENST00000519474 PSIP1O75475 530 aaKnown RBP8.99□□□□□ -0.97
HDAC3-215ENST00000519474 RPN2P04844 631 aa8.99□□□□□ -0.97
HDAC3-215ENST00000519474 CBSLP0DN79 551 aa8.99□□□□□ -0.97
HDAC3-215ENST00000519474 CYP2A7P20853 494 aa8.99□□□□□ -0.97
HDAC3-215ENST00000519474 MAGP20916 626 aa8.99□□□□□ -0.97
HDAC3-215ENST00000519474 GABRB3P28472 473 aa8.99□□□□□ -0.97
HDAC3-215ENST00000519474 CBSP35520 551 aa8.99□□□□□ -0.97
HDAC3-215ENST00000519474 CLCN7P51798 805 aa8.99□□□□□ -0.97
HDAC3-215ENST00000519474 GNG11P61952 73 aa8.99□□□□□ -0.97
HDAC3-215ENST00000519474 YBX1P67809 324 aaKnown RBP8.99□□□□□ -0.97
HDAC3-215ENST00000519474 TIAL1Q01085 375 aaKnown RBP eCLIP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms