RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 MOCOSQ96EN8 888 aa11.02□□□□□ -0.64
TCOF1-211ENST00000513346 KLHL5Q96PQ7 755 aa11.02□□□□□ -0.64
TCOF1-211ENST00000513346 NLNQ9BYT8 704 aa11.02□□□□□ -0.64
TCOF1-211ENST00000513346 SLC25A51Q9H1U9 297 aa11.02□□□□□ -0.64
TCOF1-211ENST00000513346 NANOGQ9H9S0 305 aa11.02□□□□□ -0.64
TCOF1-211ENST00000513346 MEAF6Q9HAF1 191 aa11.02□□□□□ -0.64
TCOF1-211ENST00000513346 RDH8Q9NYR8 311 aa11.02□□□□□ -0.64
TCOF1-211ENST00000513346 NUDT4Q9NZJ9 180 aa11.02□□□□□ -0.64
TCOF1-211ENST00000513346 MAN2B2Q9Y2E5 1009 aa11.02□□□□□ -0.64
TCOF1-211ENST00000513346 PCDHGB3Q9Y5G1 929 aa11.02□□□□□ -0.64
TCOF1-211ENST00000513346 MYH1P12882 1939 aa11.02□□□□□ -0.64
TCOF1-211ENST00000513346 MYH4Q9Y623 1939 aa11.02□□□□□ -0.64
TCOF1-211ENST00000513346 ARL5CA6NH57 179 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 H7C0S8 307 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 SLC1A7O00341 560 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 CCL22O00626 93 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 MATN3O15232 486 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 MT-ND2P03891 347 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 ITGB1P05556 798 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 GNAO1P09471 354 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 TCF3P15923 654 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 PCSK2P16519 638 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 ERP29P30040 261 aaKnown RBP11.02□□□□□ -0.65
TCOF1-211ENST00000513346 MAPK9P45984 424 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 DCDC1P59894 354 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 CLCA4Q14CN2 919 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 IQCCQ4KMZ1 466 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 SYVN1Q86TM6 617 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 DCP2Q8IU60 420 aaKnown RBP11.02□□□□□ -0.65
TCOF1-211ENST00000513346 CDK20Q8IZL9 346 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 CFAP52Q8N1V2 620 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 SLC37A3Q8NCC5 494 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 ZNF431Q8TF32 576 aaPredicted RBP11.02□□□□□ -0.65
TCOF1-211ENST00000513346 BPIFA1Q9NP55 256 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 TIGARQ9NQ88 270 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 COMMD9Q9P000 198 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 MALT1Q9UDY8 824 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 MLXQ9UH92 298 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 EIF2B4Q9UI10 523 aaKnown RBP11.02□□□□□ -0.65
TCOF1-211ENST00000513346 UPK1BO75841 260 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 CDH12P55289 794 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 CRTC2Q53ET0 693 aaPredicted RBP11.02□□□□□ -0.65
TCOF1-211ENST00000513346 PNCKQ6P2M8 343 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 C11orf65Q8NCR3 313 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 ZFP90Q8TF47 636 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 APOLD1Q96LR9 279 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 MAGEB10Q96LZ2 347 aaPredicted RBP11.02□□□□□ -0.65
TCOF1-211ENST00000513346 ACBD6Q9BR61 282 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 GSDMCQ9BYG8 508 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 GPN2Q9H9Y4 310 aaPredicted RBP11.02□□□□□ -0.65
TCOF1-211ENST00000513346 RAD18Q9NS91 495 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 C14orf119Q9NWQ9 140 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 AKAP7Q9P0M2 348 aaPredicted RBP11.02□□□□□ -0.65
TCOF1-211ENST00000513346 ENPP5Q9UJA9 477 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 TCAF2A6NFQ2 919 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 CSF2P04141 144 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 MYCLP1P12525 358 aaPredicted RBP11.02□□□□□ -0.65
TCOF1-211ENST00000513346 NOVP48745 357 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 VEGFBP49765 207 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 NCS1P62166 190 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 ARHGAP1Q07960 439 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 APOFQ13790 326 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 TSTQ16762 297 aaKnown RBP11.02□□□□□ -0.65
TCOF1-211ENST00000513346 KIAA1614Q5VZ46 1190 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 RPS27LQ71UM5 84 aaKnown RBP11.02□□□□□ -0.65
TCOF1-211ENST00000513346 ANKRD46Q86W74 232 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 CHPFQ8IZ52 775 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 AKAP1Q92667 903 aaKnown RBP eCLIP11.02□□□□□ -0.65
TCOF1-211ENST00000513346 AGO3Q9H9G7 860 aaKnown RBP11.02□□□□□ -0.65
TCOF1-211ENST00000513346 OLAHQ9NV23 265 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 HMGXB4Q9UGU5 601 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 RAB23Q9ULC3 237 aa11.02□□□□□ -0.65
TCOF1-211ENST00000513346 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.01□□□□□ -0.65
TCOF1-211ENST00000513346 TMEM221A6NGB7 291 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 ZNF487B1APH4 448 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 CLDN11O75508 207 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 MSL3P1P0C860 447 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 PRPS2P11908 318 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 VARSP26640 1264 aaKnown RBP11.01□□□□□ -0.65
TCOF1-211ENST00000513346 RCVRNP35243 200 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 DGKQP52824 942 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 PSMD4P55036 377 aaKnown RBP11.01□□□□□ -0.65
TCOF1-211ENST00000513346 RHAGQ02094 409 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 FPGSQ05932 587 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 SLC36A3Q495N2 470 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 ZNF697Q5TEC3 545 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 AGAP7PQ5VUJ5 663 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 KIAA1324Q6UXG2 1013 aaKnown RBP11.01□□□□□ -0.65
TCOF1-211ENST00000513346 NPAS4Q8IUM7 802 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 ACDQ96AP0 544 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 ALPK1Q96QP1 1244 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 FCRL5Q96RD9 977 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 GTPBP2Q9BX10 602 aaKnown RBP11.01□□□□□ -0.65
TCOF1-211ENST00000513346 VRTNQ9H8Y1 702 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 PRDM8Q9NQV8 689 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 CFAP97Q9P2B7 532 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 NFKBIL1Q9UBC1 381 aaPredicted RBP11.01□□□□□ -0.65
TCOF1-211ENST00000513346 TCRBV3S1A0A5B6 114 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 GRID2O43424 1007 aa11.01□□□□□ -0.65
TCOF1-211ENST00000513346 CREG1O75629 220 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms