RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TSNAXIP1Q2TAA8 658 aa28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 ANKS6Q68DC2 871 aa28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 CROCCP2Q86T23 111 aa28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 TRABD2AQ86V40 505 aa28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 TAX1BP1Q86VP1 789 aa28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 ADGRF3Q8IZF5 1079 aa28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 OR2L8Q8NGY9 312 aa28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 EXT2Q93063 718 aa28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 CENPHQ9H3R5 247 aa28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 LNPEPQ9UIQ6 1025 aa28.69■■■□□ 2.18
LIMCH1-211ENST00000509638 CDK4P11802 303 aa28.68■■■□□ 2.18
LIMCH1-211ENST00000509638 POLR2CP19387 275 aaPredicted RBP28.68■■■□□ 2.18
LIMCH1-211ENST00000509638 IMPA1P29218 277 aa28.68■■■□□ 2.18
LIMCH1-211ENST00000509638 ACAP2Q15057 778 aa28.68■■■□□ 2.18
LIMCH1-211ENST00000509638 TMPRSS9Q7Z410 1059 aa28.68■■■□□ 2.18
LIMCH1-211ENST00000509638 GPSM1Q86YR5 675 aa28.68■■■□□ 2.18
LIMCH1-211ENST00000509638 SRRM1Q8IYB3 904 aaKnown RBP28.68■■■□□ 2.18
LIMCH1-211ENST00000509638 C4orf33Q8N1A6 199 aa28.68■■■□□ 2.18
LIMCH1-211ENST00000509638 C2orf73Q8N5S3 287 aaPredicted RBP28.68■■■□□ 2.18
LIMCH1-211ENST00000509638 ZNF480Q8WV37 535 aa28.68■■■□□ 2.18
LIMCH1-211ENST00000509638 CCDC138Q96M89 665 aa28.68■■■□□ 2.18
LIMCH1-211ENST00000509638 STOX2Q9P2F5 926 aaPredicted RBP28.68■■■□□ 2.18
LIMCH1-211ENST00000509638 GSAPA4D1B5 854 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 KERAO60938 352 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 CHRM5P08912 532 aaPredicted RBP28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 KRT4P19013 534 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 PNLIPRP1P54315 467 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 GFERP55789 205 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 CLDN6P56747 220 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 PRKAA1Q13131 559 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 ARHGAP19Q14CB8 494 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 TGFBIQ15582 683 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 CYP2A13Q16696 494 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 ARMC6Q6NXE6 501 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 IRGCQ6NXR0 463 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 WDR74Q6RFH5 385 aaPredicted RBP28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 SH2D5Q6ZV89 423 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 HDXQ7Z353 690 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 STAG3L4Q8TBR4 150 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 TMEM9Q9P0T7 183 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 MN1Q10571 1320 aaPredicted RBP28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 SQSTM1Q13501 440 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 TECRLQ5HYJ1 363 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 SYTL1Q8IYJ3 562 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 PPFIBP2Q8ND30 876 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 RHEBL1Q8TAI7 183 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 SCYL1Q96KG9 808 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 ATOH8Q96SQ7 321 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 SPHK1Q9NYA1 384 aa28.67■■■□□ 2.18
LIMCH1-211ENST00000509638 NCF1BA6NI72 391 aaPredicted RBP28.66■■■□□ 2.18
LIMCH1-211ENST00000509638 NCF1CA8MVU1 366 aaPredicted RBP28.66■■■□□ 2.18
LIMCH1-211ENST00000509638 CAPN5O15484 640 aaPredicted RBP28.66■■■□□ 2.18
LIMCH1-211ENST00000509638 NCF1P14598 390 aaPredicted RBP28.66■■■□□ 2.18
LIMCH1-211ENST00000509638 PEBP1P30086 187 aaKnown RBP28.66■■■□□ 2.18
LIMCH1-211ENST00000509638 KPNA2P52292 529 aaKnown RBP28.66■■■□□ 2.18
LIMCH1-211ENST00000509638 FASTKQ14296 549 aaKnown RBP28.66■■■□□ 2.18
LIMCH1-211ENST00000509638 CLPPQ16740 277 aaPredicted RBP28.66■■■□□ 2.18
LIMCH1-211ENST00000509638 RBM44Q6ZP01 1051 aaKnown RBP28.66■■■□□ 2.18
LIMCH1-211ENST00000509638 LCA5Q86VQ0 697 aa28.66■■■□□ 2.18
LIMCH1-211ENST00000509638 HMGCLL1Q8TB92 370 aa28.66■■■□□ 2.18
LIMCH1-211ENST00000509638 TGM7Q96PF1 710 aa28.66■■■□□ 2.18
LIMCH1-211ENST00000509638 EGFL8Q99944 293 aa28.66■■■□□ 2.18
LIMCH1-211ENST00000509638 XPR1Q9UBH6 696 aa28.66■■■□□ 2.18
LIMCH1-211ENST00000509638 PIPSLA2A3N6 862 aa28.65■■■□□ 2.18
LIMCH1-211ENST00000509638 ZNF839A8K0R7 811 aa28.65■■■□□ 2.18
LIMCH1-211ENST00000509638 MATN2O00339 956 aa28.65■■■□□ 2.18
LIMCH1-211ENST00000509638 MYZAPP0CAP1 466 aa28.65■■■□□ 2.18
LIMCH1-211ENST00000509638 HOXB3P14651 431 aaPredicted RBP28.65■■■□□ 2.18
LIMCH1-211ENST00000509638 HSD17B2P37059 387 aa28.65■■■□□ 2.18
LIMCH1-211ENST00000509638 KCNC1P48547 511 aa28.65■■■□□ 2.18
LIMCH1-211ENST00000509638 CDKL1Q00532 357 aa28.65■■■□□ 2.18
LIMCH1-211ENST00000509638 HES3Q5TGS1 186 aa28.65■■■□□ 2.18
LIMCH1-211ENST00000509638 PLXDC1Q8IUK5 500 aa28.65■■■□□ 2.18
LIMCH1-211ENST00000509638 RAB33BQ9H082 229 aa28.65■■■□□ 2.18
LIMCH1-211ENST00000509638 ACTR10Q9NZ32 417 aa28.65■■■□□ 2.18
LIMCH1-211ENST00000509638 PCM1Q15154 2024 aa28.65■■■□□ 2.18
LIMCH1-211ENST00000509638 PTPRBP23467 1997 aa28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 CCDC189A1A4V9 331 aa28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 C2orf74A8MZ97 194 aa28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 SUPT3HB4E1H0 165 aa28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 TK2O00142 265 aa28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 SUPT3HO75486 399 aa28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 MPSTP25325 297 aa28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 PDX1P52945 283 aa28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 TSTA3Q13630 321 aaPredicted RBP28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 OR4D9Q8NGE8 314 aa28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 FBXL8Q96CD0 374 aa28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 DPYSL5Q9BPU6 564 aa28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 TWSG1Q9GZX9 223 aa28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 EPHA6Q9UF33 1036 aa28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 KLHL3Q9UH77 587 aa28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 POMT2Q9UKY4 750 aa28.64■■■□□ 2.18
LIMCH1-211ENST00000509638 GOLGA6L10A6NI86 522 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 E7ENX8 843 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 UBXN8O00124 270 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 GLRA3O75311 464 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 GSTA1P08263 222 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 ANXA5P08758 320 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 ID4P47928 161 aa28.63■■■□□ 2.17
LIMCH1-211ENST00000509638 TBPL1P62380 186 aa28.63■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms