RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PI15O43692 258 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 NDUFS2O75306 463 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 PCNAP12004 261 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 MSH3P20585 1137 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 ARNTP27540 789 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 MAGEA3P43357 314 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 TAS2R39P59534 338 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 RPS14P62263 151 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 LIPIQ6XZB0 460 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 Q6ZNX1 250 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 SYTL1Q8IYJ3 562 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 LILRA2Q8N149 483 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 CBR4Q8N4T8 237 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 POC5Q8NA72 575 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 DCAKDQ8WVC6 231 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 NUS1Q96E22 293 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 SHDQ96IW2 340 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 FAR2Q96K12 515 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 OR52B2Q96RD2 323 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 BTBD1Q9H0C5 482 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 FAM86C2PA6NEL3 165 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 PFDN6O15212 129 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 HTRA2O43464 458 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 TSPAN9O75954 239 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 CDK14O94921 469 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 HMGCLP35914 325 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 EIF2DP41214 584 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 MLLT3P42568 568 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 TNFRSF4P43489 277 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 POLD2P49005 469 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 TRMT11Q7Z4G4 463 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 TMEFF1Q8IYR6 380 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 DSELQ8IZU8 1212 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 UBE2J2Q8N2K1 259 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 SIDT2Q8NBJ9 832 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 PLA2G15Q8NCC3 412 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 DNASE1L2Q92874 299 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 COPS8Q99627 209 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 GPR21Q99679 349 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 OSBPL11Q9BXB4 747 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 MAGEE1Q9HCI5 957 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 LTB4R2Q9NPC1 389 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 SNX15Q9NRS6 342 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 AP4S1Q9Y587 144 aa8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 CFAP20Q9Y6A4 193 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-209ENST00000509277 SYCE1LA8MT33 242 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 BHMG1C9JSJ3 638 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 KPNA4O00629 521 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 RNGTTO60942 597 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 TMCC2O75069 709 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 GUCA1CO95843 209 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 RALBP11234 206 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 STMN1P16949 149 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 ZNF23P17027 643 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 ITGB7P26010 798 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 SPINT3P49223 89 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 CDK9P50750 372 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 PPP2CBP62714 309 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 PPP2CAP67775 309 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 ELP6Q0PNE2 266 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 SRSF5Q13243 272 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 GAS6Q14393 721 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 SLC9B1Q4ZJI4 515 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 KIAA0930Q6ICG6 404 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 KCTD8Q6ZWB6 473 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 FIG4Q92562 907 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 ESAMQ96AP7 390 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 SDCCAG3Q96C92 435 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 TOE1Q96GM8 510 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 ASB2Q96Q27 587 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 CPNE1Q99829 537 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 CPEB1Q9BZB8 566 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 COG4Q9H9E3 785 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 CLK4Q9HAZ1 481 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 TCF7L2Q9NQB0 619 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 NLE1Q9NVX2 485 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 MYO15AQ9UKN7 3530 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 NUP210Q8TEM1 1887 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 A0A1W2PQF6 199 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 C7orf72A4D263 438 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 KRT87PA6NCN2 255 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 FAM159BA6NKW6 160 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 GABRG2P18507 467 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 CCNA2P20248 432 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 ME2P23368 584 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 GABRB3P28472 473 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 DRD3P35462 400 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 TPMTP51580 245 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 ZNF140P52738 457 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 PHC1P78364 1004 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 CREB5Q02930 508 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 MTAPQ13126 283 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 INPP5AQ14642 412 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 CILP2Q8IUL8 1156 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 C2orf73Q8N5S3 287 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 ZNF781Q8N8C0 355 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 PHF21BQ96EK2 531 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 FANCEQ9HB96 536 aa8.48□□□□□ -1.05
LIMCH1-209ENST00000509277 PRDM8Q9NQV8 689 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms