RNA–Protein interactions for RNA: ENST00000505804.1

TOPBP1-204, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 472 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-204ENST00000505804 CDK20Q8IZL9 346 aa3.66□□□□□ -1.82
TOPBP1-204ENST00000505804 Q8NFD4 153 aa3.66□□□□□ -1.82
TOPBP1-204ENST00000505804 PHLDA1Q8WV24 401 aaPredicted RBP3.66□□□□□ -1.82
TOPBP1-204ENST00000505804 ZNF558Q96NG5 402 aa3.66□□□□□ -1.82
TOPBP1-204ENST00000505804 CPNE1Q99829 537 aa3.66□□□□□ -1.82
TOPBP1-204ENST00000505804 NAA11Q9BSU3 229 aaPredicted RBP3.66□□□□□ -1.82
TOPBP1-204ENST00000505804 URM1Q9BTM9 101 aaKnown RBP3.66□□□□□ -1.82
TOPBP1-204ENST00000505804 KRTAP2-2Q9BYT5 123 aa3.66□□□□□ -1.82
TOPBP1-204ENST00000505804 FAM129AQ9BZQ8 928 aa3.66□□□□□ -1.82
TOPBP1-204ENST00000505804 MIS12Q9H081 205 aa3.66□□□□□ -1.82
TOPBP1-204ENST00000505804 GKN1Q9NS71 199 aa3.66□□□□□ -1.82
TOPBP1-204ENST00000505804 INTS9Q9NV88 658 aaKnown RBP3.66□□□□□ -1.82
TOPBP1-204ENST00000505804 GIMAP2Q9UG22 337 aa3.66□□□□□ -1.82
TOPBP1-204ENST00000505804 TMED3Q9Y3Q3 217 aa3.66□□□□□ -1.82
TOPBP1-204ENST00000505804 STK36Q9NRP7 1315 aa3.66□□□□□ -1.82
TOPBP1-204ENST00000505804 ZNF197O14709 1029 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 PLA2G4BP0C869 781 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 HAPLN1P10915 354 aaPredicted RBP3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 ERCC2P18074 760 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 CD22P20273 847 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 NKX2-1P43699 371 aaPredicted RBP3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 CCR10P46092 362 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 GLIPR1P48060 266 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 LHX1P48742 406 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 ASCL1P50553 236 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 CRIP2P52943 208 aaPredicted RBP3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 RAD23AP54725 363 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 CDR2Q01850 454 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 TAF10Q12962 218 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 GPR17Q13304 367 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 VEZF1Q14119 521 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 COG2Q14746 738 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 TNIP1Q15025 636 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 TAF13Q15543 124 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 UGT3A2Q3SY77 523 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 ZNF876PQ49A33 203 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 MCMDC2Q4G0Z9 681 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 XKR3Q5GH77 459 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 GFI1BQ5VTD9 330 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 ARHGAP17Q68EM7 881 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 CHST3Q7LGC8 479 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 SLC16A9Q7RTY1 509 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 APLFQ8IW19 511 aaPredicted RBP3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 MFN1Q8IWA4 741 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 CAMKVQ8NCB2 501 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 FAM76AQ8TAV0 307 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 ROBO4Q8WZ75 1007 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 MOB3AQ96BX8 217 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 ZNF653Q96CK0 615 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 OTUB1Q96FW1 271 aaPredicted RBP3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 DUX3Q96PT4 197 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 FSD1Q9BTV5 496 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 ZNF696Q9H7X3 374 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 SCRT2Q9NQ03 307 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 INTS10Q9NVR2 710 aaKnown RBP3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 DDX43Q9NXZ2 648 aaKnown RBP3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 TBC1D7Q9P0N9 293 aa3.65□□□□□ -1.83
TOPBP1-204ENST00000505804 IGHV4-61A0A0C4DH41 118 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 ENO4A6NNW6 628 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 HHLA1C9JL84 531 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 H7C0S8 307 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 NADKO95544 446 aaPredicted RBP3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 IGHV4-59P01825 116 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 EDN1P05305 212 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 CCDC175P0C221 793 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 PTGER4P35408 488 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 LIMK1P53667 647 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 KRTAP10-9P60411 292 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 GNB1P62873 340 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 KCNJ10P78508 379 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 RBM39Q14498 530 aaKnown RBP3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 P2RY6Q15077 328 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 ODF4Q2M2E3 257 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 GTDC1Q4AE62 458 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 ARHGEF16Q5VV41 709 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 PIGZQ86VD9 579 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 ANKRD13CQ8N6S4 541 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 ZNF611Q8N823 705 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 BMPERQ8N8U9 685 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 HPSE2Q8WWQ2 592 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 NR4A3Q92570 626 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 FAM20AQ96MK3 541 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 MUS81Q96NY9 551 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 FGF21Q9NSA1 209 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 SPHK1Q9NYA1 384 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 FLRT3Q9NZU0 649 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 TRIM17Q9Y577 477 aa3.64□□□□□ -1.83
TOPBP1-204ENST00000505804 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.63□□□□□ -1.83
TOPBP1-204ENST00000505804 CLDN4O14493 209 aa3.63□□□□□ -1.83
TOPBP1-204ENST00000505804 TCERG1O14776 1098 aaKnown RBP3.63□□□□□ -1.83
TOPBP1-204ENST00000505804 TRMUO75648 421 aaKnown RBP3.63□□□□□ -1.83
TOPBP1-204ENST00000505804 DDHD2O94830 711 aa3.63□□□□□ -1.83
TOPBP1-204ENST00000505804 EML2O95834 649 aa3.63□□□□□ -1.83
TOPBP1-204ENST00000505804 CLPTM1O96005 669 aa3.63□□□□□ -1.83
TOPBP1-204ENST00000505804 PAK4O96013 591 aaPredicted RBP3.63□□□□□ -1.83
TOPBP1-204ENST00000505804 CEACAM1P13688 526 aa3.63□□□□□ -1.83
TOPBP1-204ENST00000505804 GNB3P16520 340 aa3.63□□□□□ -1.83
TOPBP1-204ENST00000505804 CDH3P22223 829 aa3.63□□□□□ -1.83
TOPBP1-204ENST00000505804 CA6P23280 308 aa3.63□□□□□ -1.83
TOPBP1-204ENST00000505804 MT3P25713 68 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms