RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 SUSD1Q6UWL2 747 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 SLC22A9Q8IVM8 553 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 GPR156Q8NFN8 814 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 OR4E2Q8NGC2 313 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 OR4C6Q8NH72 309 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 MENTQ9BUN1 341 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 KCNH6Q9H252 994 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 PTBP2Q9UKA9 531 aaKnown RBP18.79■□□□□ 0.6
USP39-218ENST00000493829 BTBD3Q9Y2F9 522 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 PPM1DO15297 605 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 BIRC5O15392 142 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 TRIM13O60858 407 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 WDR47O94967 919 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 TSPAN8P19075 237 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 PKLRP30613 574 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 CCR10P46092 362 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 PPM1FP49593 454 aaPredicted RBP18.79■□□□□ 0.6
USP39-218ENST00000493829 TBPL1P62380 186 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 HERVK_113P63132 956 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 PTCHD3Q3KNS1 767 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 AASDHQ4L235 1098 aaPredicted RBP18.79■□□□□ 0.6
USP39-218ENST00000493829 ZCCHC8Q6NZY4 707 aaKnown RBP18.79■□□□□ 0.6
USP39-218ENST00000493829 RAB42Q8N4Z0 105 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 OR10G6Q8NH81 332 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 CCDC126Q96EE4 140 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 NSUN5Q96P11 429 aaKnown RBP18.79■□□□□ 0.6
USP39-218ENST00000493829 TBC1D10AQ9BXI6 508 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 ERVK-6Q9BXR3 956 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 SPATA7Q9P0W8 599 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 LNPEPQ9UIQ6 1025 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 TMCO1Q9UM00 188 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 RNF215Q9Y6U7 377 aa18.79■□□□□ 0.6
USP39-218ENST00000493829 PCDHGA12O60330 932 aa18.78■□□□□ 0.6
USP39-218ENST00000493829 SUPT7LO94864 414 aa18.78■□□□□ 0.6
USP39-218ENST00000493829 HNMTP50135 292 aa18.78■□□□□ 0.6
USP39-218ENST00000493829 RAB28P51157 221 aa18.78■□□□□ 0.6
USP39-218ENST00000493829 CFAP157Q5JU67 520 aa18.78■□□□□ 0.6
USP39-218ENST00000493829 ZNF678Q5SXM1 525 aa18.78■□□□□ 0.6
USP39-218ENST00000493829 CES4AQ5XG92 561 aa18.78■□□□□ 0.6
USP39-218ENST00000493829 OGFOD3Q6PK18 319 aa18.78■□□□□ 0.6
USP39-218ENST00000493829 TCAIMQ8N3R3 496 aa18.78■□□□□ 0.6
USP39-218ENST00000493829 LINC01555Q8NAE3 123 aa18.78■□□□□ 0.6
USP39-218ENST00000493829 SREK1Q8WXA9 508 aaKnown RBP18.78■□□□□ 0.6
USP39-218ENST00000493829 ATL1Q8WXF7 558 aa18.78■□□□□ 0.6
USP39-218ENST00000493829 APOLD1Q96LR9 279 aa18.78■□□□□ 0.6
USP39-218ENST00000493829 DUSP23Q9BVJ7 150 aa18.78■□□□□ 0.6
USP39-218ENST00000493829 GATA5Q9BWX5 397 aaPredicted RBP18.78■□□□□ 0.6
USP39-218ENST00000493829 SRMSQ9H3Y6 488 aa18.78■□□□□ 0.6
USP39-218ENST00000493829 RAPGEFL1Q9UHV5 662 aa18.78■□□□□ 0.6
USP39-218ENST00000493829 RHPN2P1A8MT19 583 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 STX16-NPEPL1H3BU86 382 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 STX16O14662 325 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 KDM1AO60341 852 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 PSMB5P28074 263 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 CSRP2Q16527 193 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 CHCHD2P9Q5T1J5 151 aaPredicted RBP18.77■□□□□ 0.6
USP39-218ENST00000493829 THEMIS2Q5TEJ8 643 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 ANKS6Q68DC2 871 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 TMEM26Q6ZUK4 368 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 AMIGO1Q86WK6 493 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 C17orf82Q86X59 251 aaPredicted RBP18.77■□□□□ 0.6
USP39-218ENST00000493829 SNX31Q8N9S9 440 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 PPP4R1Q8TF05 950 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 UBTD2Q8WUN7 234 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 PITPNM3Q9BZ71 974 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 SHCBP1LQ9BZQ2 653 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 CD244Q9BZW8 370 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 DNAAF2Q9NVR5 837 aaKnown RBP18.77■□□□□ 0.6
USP39-218ENST00000493829 OPTCQ9UBM4 332 aa18.77■□□□□ 0.6
USP39-218ENST00000493829 CDX4O14627 284 aaPredicted RBP18.76■□□□□ 0.59
USP39-218ENST00000493829 STK16O75716 305 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 TYRP1P17643 537 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 IMPDH1P20839 514 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 SHMT2P34897 504 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 MDH1P40925 334 aaKnown RBP18.76■□□□□ 0.59
USP39-218ENST00000493829 FASLGP48023 281 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 CDH13P55290 713 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 UNC50Q53HI1 259 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 TEX9Q8N6V9 391 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 SETD7Q8WTS6 366 aaKnown RBP18.76■□□□□ 0.59
USP39-218ENST00000493829 SH3KBP1Q96B97 665 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 L3HYPDHQ96EM0 354 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 SLC38A3Q99624 504 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 ACAT2Q9BWD1 397 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 RAB11FIP5Q9BXF6 653 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 SEMA4BQ9NPR2 832 aaPredicted RBP18.76■□□□□ 0.59
USP39-218ENST00000493829 TMEM9BQ9NQ34 198 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 CCDC177Q9NQR7 707 aaPredicted RBP18.76■□□□□ 0.59
USP39-218ENST00000493829 LRIT1Q9P2V4 623 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 PCTPQ9UKL6 214 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 SLC22A14Q9Y267 594 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 ANGPTL3Q9Y5C1 460 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 OR6C74A6NCV1 312 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 E7ENX8 843 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 E2F3O00716 465 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 LYPLA1O75608 230 aaPredicted RBP18.76■□□□□ 0.59
USP39-218ENST00000493829 RPS17P08708 135 aaKnown RBP18.76■□□□□ 0.59
USP39-218ENST00000493829 ERGP11308 486 aa18.76■□□□□ 0.59
USP39-218ENST00000493829 ARL1P40616 181 aaPredicted RBP18.76■□□□□ 0.59
USP39-218ENST00000493829 SLC6A12P48065 614 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms