RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 GSDMCQ9BYG8 508 aa12.29□□□□□ -0.44
VPS52-220ENST00000493674 STN1Q9H668 368 aaKnown RBP12.29□□□□□ -0.44
VPS52-220ENST00000493674 ERVMER34-1Q9H9K5 563 aa12.29□□□□□ -0.44
VPS52-220ENST00000493674 SEMA4BQ9NPR2 832 aaPredicted RBP12.29□□□□□ -0.44
VPS52-220ENST00000493674 KCNK4Q9NYG8 393 aa12.29□□□□□ -0.44
VPS52-220ENST00000493674 MARCOQ9UEW3 520 aaPredicted RBP12.29□□□□□ -0.44
VPS52-220ENST00000493674 HEBP2Q9Y5Z4 205 aa12.29□□□□□ -0.44
VPS52-220ENST00000493674 USH1CQ9Y6N9 552 aa12.29□□□□□ -0.44
VPS52-220ENST00000493674 ADAMTS20P59510 1910 aa12.29□□□□□ -0.44
VPS52-220ENST00000493674 LAMA1P25391 3075 aa12.29□□□□□ -0.44
VPS52-220ENST00000493674 PDZK1P1A8MUH7 402 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 TMEM233B4DJY2 109 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 E7ENX8 843 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 SLCO1B7G3V0H7 640 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 HDAC3O15379 428 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 CELA2BP08218 269 aaPredicted RBP12.28□□□□□ -0.44
VPS52-220ENST00000493674 TSPAN8P19075 237 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 ITPKAP23677 461 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 PRDX3P30048 256 aaKnown RBP12.28□□□□□ -0.44
VPS52-220ENST00000493674 HSD17B2P37059 387 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 GDF5P43026 501 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 PNLIPRP1P54315 467 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 TAP2Q03519 686 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 TUBB3Q13509 450 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 GGTA1PQ4G0N0 100 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 SH2D4BQ5SQS7 431 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 LYSMD4Q5XG99 296 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 RNF165Q6ZSG1 346 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 GPRIN3Q6ZVF9 776 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 ARMCX6Q7L4S7 300 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 SYVN1Q86TM6 617 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 WDR75Q8IWA0 830 aaKnown RBP12.28□□□□□ -0.44
VPS52-220ENST00000493674 CACNA2D3Q8IZS8 1091 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 CHCHD4Q8N4Q1 142 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 TEX9Q8N6V9 391 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 CCDC197Q8NCU1 140 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 PHC3Q8NDX5 983 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 OR52B6Q8NGF0 335 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 MAPK15Q8TD08 544 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 ATOH1Q92858 354 aaPredicted RBP12.28□□□□□ -0.44
VPS52-220ENST00000493674 CAMK1GQ96NX5 476 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 OR4K3Q96R72 315 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 MIR1-1HGQ9H1L0 117 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 KIR3DX1Q9H7L2 352 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 IPPKQ9H8X2 491 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 MID1IP1Q9NPA3 183 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 DNAJC11Q9NVH1 559 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 INTS7Q9NVH2 962 aaKnown RBP12.28□□□□□ -0.44
VPS52-220ENST00000493674 DNAJC28Q9NX36 388 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 ZSCAN32Q9NX65 697 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 TAAR2Q9P1P5 351 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 ZNF624Q9P2J8 865 aaPredicted RBP12.28□□□□□ -0.44
VPS52-220ENST00000493674 VTI1BQ9UEU0 232 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 APOBEC3BQ9UH17 382 aaKnown RBP12.28□□□□□ -0.44
VPS52-220ENST00000493674 POLG2Q9UHN1 485 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 PILRBQ9UKJ0 227 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 ARL2BPQ9Y2Y0 163 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 CFAP20Q9Y6A4 193 aaKnown RBP12.28□□□□□ -0.44
VPS52-220ENST00000493674 USP34Q70CQ2 3546 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 RP1P56715 2156 aa12.28□□□□□ -0.44
VPS52-220ENST00000493674 CROCCQ5TZA2 2017 aa12.27□□□□□ -0.44
VPS52-220ENST00000493674 WDR87Q6ZQQ6 2873 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 KCNE1BA0A087WTH5 132 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 A0A1B0GTW7 788 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 OR52A4PA6NMU1 304 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 PRR5-ARHGAP8B1AHC4 643 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 PROB1E7EW31 1015 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 AZIN1O14977 448 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 CCNT2O60583 730 aaKnown RBP12.27□□□□□ -0.45
VPS52-220ENST00000493674 PRAMEF4O60810 478 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 WDR47O94967 919 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 OTCP00480 354 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 JUNP05412 331 aaKnown RBP12.27□□□□□ -0.45
VPS52-220ENST00000493674 ENO1P06733 434 aaKnown RBP12.27□□□□□ -0.45
VPS52-220ENST00000493674 KITP10721 976 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 EPB42P16452 691 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 JUNDP17535 347 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 NDUFS1P28331 727 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 PKLRP30613 574 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 PLA2G5P39877 138 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 HALP42357 657 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 CTSKP43235 329 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 ERVPABLB-1P60509 514 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 TBPL1P62380 186 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 UBE2IP63279 158 aaKnown RBP12.27□□□□□ -0.45
VPS52-220ENST00000493674 BNC1Q01954 994 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 CDC16Q13042 620 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 NAE1Q13564 534 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 ZNF542PQ5EBM4 170 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 PRAMEF9Q5VWM5 478 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 LETMD1Q6P1Q0 360 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 IYDQ6PHW0 289 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 SLC30A9Q6PML9 568 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 EPGNQ6UW88 154 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 THOC6Q86W42 341 aaKnown RBP12.27□□□□□ -0.45
VPS52-220ENST00000493674 SDR16C5Q8N3Y7 309 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 THOC1Q96FV9 657 aaKnown RBP12.27□□□□□ -0.45
VPS52-220ENST00000493674 MAELQ96JY0 434 aaKnown RBP12.27□□□□□ -0.45
VPS52-220ENST00000493674 RAB11FIP5Q9BXF6 653 aa12.27□□□□□ -0.45
VPS52-220ENST00000493674 TMEM120AQ9BXJ8 343 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms