RNA–Protein interactions for RNA: ENST00000489853.1

SNRNP40-206, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 1,928 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-206ENST00000489853 GADD45AP24522 165 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 MGAT1P26572 445 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 BMP8BP34820 402 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CA5AP35218 305 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 LIPAP38571 399 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 RECQLP46063 649 aaPredicted RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CCT3P49368 545 aaKnown RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 MAP2K6P52564 334 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 LIMK1P53667 647 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 SESN2P58004 480 aaPredicted RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 YWHAEP62258 255 aaKnown RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 IL5RAQ01344 420 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 SPEM2Q0P670 501 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CDH17Q12864 832 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 SP140Q13342 867 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CAMK1Q14012 370 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CAPRIN1Q14444 709 aaKnown RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 IRF3Q14653 427 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 ZNF169Q14929 603 aaPredicted RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 LTB4RQ15722 352 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 GPR19Q15760 415 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 TRIM60Q495X7 471 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 VPS26BQ4G0F5 336 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 PYCR3Q53H96 274 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 SLC35F1Q5T1Q4 408 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 SAMD5Q5TGI4 173 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CNSTQ6PJW8 725 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 SLC46A3Q7Z3Q1 461 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 BMP8AQ7Z5Y6 402 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 GALNT10Q86SR1 603 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 MAP4K3Q8IVH8 894 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 TRIM48Q8IWZ4 208 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CCDC36Q8IYA8 594 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 DCP1BQ8IZD4 617 aaKnown RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 RBFAQ8N0V3 343 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 MIER2Q8N344 545 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 FSTL5Q8N475 847 aaPredicted RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 ZNF540Q8NDQ6 660 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 OR5K1Q8NHB7 308 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 JOSD2Q8TAC2 188 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CNIH3Q8TBE1 160 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 TEX47Q8TBZ9 253 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 ELMO1Q92556 727 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 SLC9A6Q92581 669 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 GAL3ST3Q96A11 431 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CCDC126Q96EE4 140 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CDCA5Q96FF9 252 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CPB2Q96IY4 423 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 SERPINB11Q96P15 392 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 SORCS2Q96PQ0 1159 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 MCCC1Q96RQ3 725 aaPredicted RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 SYT17Q9BSW7 474 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 AMNQ9BXJ7 453 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 BHLHE41Q9C0J9 482 aaPredicted RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 PPIL3Q9H2H8 161 aaKnown RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 TMEM245Q9H330 911 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 GHITMQ9H3K2 345 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CAB39LQ9H9S4 337 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 APOBEC3GQ9HC16 384 aaKnown RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 ACSS2Q9NR19 701 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 GTSE1Q9NYZ3 720 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 PTTG3PQ9NZH4 202 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 WRAP73Q9P2S5 460 aaPredicted RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 MUTYHQ9UIF7 546 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 MAGEL2Q9UJ55 1249 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CDH9Q9ULB4 789 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 MKL2Q9ULH7 1088 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 SCML1Q9UN30 329 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 ING4Q9UNL4 249 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 MRPL11Q9Y3B7 192 aaKnown RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 PCDHB14Q9Y5E9 798 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 KLK4Q9Y5K2 254 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 TNPO3Q9Y5L0 923 aaKnown RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 ACTL7AQ9Y615 435 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 A0A0U1RQS6 177 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 PQLC2LA1A4F0 135 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 MROH6A6NGR9 719 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 OR6C65A6NJZ3 312 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 FAM170BA6NMN3 283 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 NT5C1B-RDH14C9J2C7 533 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 KRBOX1C9JBD0 128 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 M0R082 166 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 NR5A2O00482 541 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 MYL12BO14950 172 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 PROM1O43490 865 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CHMP2AO43633 222 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 SSX5O60225 188 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 HS6ST1O60243 411 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 NOBOXO60393 691 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CILPO75339 1184 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 ERN1O75460 977 aaKnown RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 USP2O75604 605 aaPredicted RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 RHOBTB1O94844 696 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 TNNC2P02585 160 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 DNTTP04053 509 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 CYBBP04839 570 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 LCKP06239 509 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 HOXB6P17509 224 aaKnown RBP4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 MYL12AP19105 171 aa4.66□□□□□ -1.66
SNRNP40-206ENST00000489853 TNNI1P19237 187 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms