RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 EURLQ9NYK6 297 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 NOVA2Q9UNW9 492 aaKnown RBP12.52□□□□□ -0.41
HDAC6-227ENST00000485102 ENTPD4Q9Y227 616 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 PCDHA3Q9Y5H8 950 aa12.52□□□□□ -0.41
HDAC6-227ENST00000485102 POLQO75417 2590 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 APCP25054 2843 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 A0A1B0GX78 115 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 GOLGA6L9A6NEM1 432 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 MROH6A6NGR9 719 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 BHMG1C9JSJ3 638 aaPredicted RBP12.51□□□□□ -0.41
HDAC6-227ENST00000485102 CCL22O00626 93 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 E2F3O00716 465 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 KCNN4O15554 427 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 PJA2O43164 708 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 HNRNPRO43390 633 aaKnown RBP12.51□□□□□ -0.41
HDAC6-227ENST00000485102 FTH1P02794 183 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 ITGA3P26006 1051 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 CTNNA1P35221 906 aaKnown RBP12.51□□□□□ -0.41
HDAC6-227ENST00000485102 EIF3EP60228 445 aaKnown RBP12.51□□□□□ -0.41
HDAC6-227ENST00000485102 ZRSR2Q15696 482 aaKnown RBP12.51□□□□□ -0.41
HDAC6-227ENST00000485102 PARP6Q2NL67 630 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 DEFB110Q30KQ9 67 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 CCDC181Q5TID7 509 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 AGAP7PQ5VUJ5 663 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 FCRL6Q6DN72 434 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 RPUSD3Q6P087 351 aaKnown RBP12.51□□□□□ -0.41
HDAC6-227ENST00000485102 ZNF662Q6ZS27 426 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 TAS2R42Q7RTR8 314 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 SYCE1Q8N0S2 351 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 RNF10Q8N5U6 811 aaKnown RBP12.51□□□□□ -0.41
HDAC6-227ENST00000485102 CCDC110Q8TBZ0 833 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 SLC22A18Q96BI1 424 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 VPS50Q96JG6 964 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 ZNF285Q96NJ3 590 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 AGAP4Q96P64 663 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 SPSB2Q99619 263 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 OSBPL8Q9BZF1 889 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 SLC6A20Q9NP91 592 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 SMARCAL1Q9NZC9 954 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 IL1RAPL1Q9NZN1 696 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 FBXL4Q9UKA2 621 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 NXT1Q9UKK6 140 aaKnown RBP12.51□□□□□ -0.41
HDAC6-227ENST00000485102 PKDREJQ9NTG1 2253 aa12.51□□□□□ -0.41
HDAC6-227ENST00000485102 CROCCQ5TZA2 2017 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 SOWAHDA6NJG2 315 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 SOCS6O14544 535 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 FKBP9O95302 570 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 STSP08842 583 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 PRSS56P0CW18 603 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 ITGAXP20702 1163 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 PEBP1P30086 187 aaKnown RBP12.5□□□□□ -0.41
HDAC6-227ENST00000485102 RAB28P51157 221 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 TLR1Q15399 786 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 NKG7Q16617 165 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 DNAJC21Q5F1R6 531 aaKnown RBP12.5□□□□□ -0.41
HDAC6-227ENST00000485102 DARS2Q6PI48 645 aaKnown RBP12.5□□□□□ -0.41
HDAC6-227ENST00000485102 KIRREL2Q6UWL6 708 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 MCATQ8IVS2 390 aaKnown RBP12.5□□□□□ -0.41
HDAC6-227ENST00000485102 TMEM151BQ8IW70 566 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 DNAJB14Q8TBM8 379 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 GRHL3Q8TE85 626 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 ELMO1Q92556 727 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 LMF1Q96S06 567 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 SLX1AQ9BQ83 275 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 TRIM56Q9BRZ2 755 aaKnown RBP12.5□□□□□ -0.41
HDAC6-227ENST00000485102 MENTQ9BUN1 341 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 LHPPQ9H008 270 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 SEMA3GQ9NS98 782 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 CSAG2Q9Y5P2 127 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 HS3ST3B1Q9Y662 390 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 PRSS21Q9Y6M0 314 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 PCNX1Q96RV3 2341 aa12.5□□□□□ -0.41
HDAC6-227ENST00000485102 FITM1A5D6W6 292 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 VSTM2BA6NLU5 285 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 ISM1B1AKI9 464 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 F8W8V4 182 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 MASP2O00187 686 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 DSCR3O14972 297 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 LRRTM2O43300 516 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 TJP3O95049 919 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 S1PR4O95977 384 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 OR56A5P0C7T3 313 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 ALAS2P22557 587 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 ELAVL4P26378 380 aaKnown RBP12.49□□□□□ -0.41
HDAC6-227ENST00000485102 PKLRP30613 574 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 FOXN2P32314 431 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 NAP1L1P55209 391 aaKnown RBP12.49□□□□□ -0.41
HDAC6-227ENST00000485102 FOXL2P58012 376 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 SPARCL1Q14515 664 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 ZNF169Q14929 603 aaPredicted RBP12.49□□□□□ -0.41
HDAC6-227ENST00000485102 SLC9A5Q14940 896 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 HIF1AQ16665 826 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 ZC3H12BQ5HYM0 836 aaKnown RBP12.49□□□□□ -0.41
HDAC6-227ENST00000485102 TCTE1Q5JU00 501 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 TTLL10Q6ZVT0 673 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 TMEM139Q8IV31 216 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 SLC22A15Q8IZD6 547 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 ZUFSPQ96AP4 578 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 LRRC40Q9H9A6 602 aa12.49□□□□□ -0.41
HDAC6-227ENST00000485102 TDRKHQ9Y2W6 561 aaKnown RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms