RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 TMEM102Q8N9M5 508 aaPredicted RBP20.75■□□□□ 0.91
USP40-215ENST00000484528 CLEC18CQ8NCF0 446 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 PEX13Q92968 403 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 DHRS4Q9BTZ2 278 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 MENTQ9BUN1 341 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 CHRNA10Q9GZZ6 450 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 IFT80Q9P2H3 777 aaPredicted RBP20.75■□□□□ 0.91
USP40-215ENST00000484528 NDOR1Q9UHB4 597 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 TSR3Q9UJK0 312 aaKnown RBP20.75■□□□□ 0.91
USP40-215ENST00000484528 G3BP2Q9UN86 482 aaKnown RBP20.75■□□□□ 0.91
USP40-215ENST00000484528 PLCL2Q9UPR0 1127 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 RUVBL2Q9Y230 463 aaKnown RBP20.75■□□□□ 0.91
USP40-215ENST00000484528 ZNF451Q9Y4E5 1061 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 PCM1Q15154 2024 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 DOCK10Q96BY6 2186 aa20.75■□□□□ 0.91
USP40-215ENST00000484528 CNOT3O75175 753 aaKnown RBP20.74■□□□□ 0.91
USP40-215ENST00000484528 RPN2P04844 631 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 CD9P21926 228 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 AOAHP28039 575 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 NMBRP28336 390 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 FOLR3P41439 243 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 KCNJ1P48048 391 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 TERF1P54274 439 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 RRADP55042 308 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 DCDP81605 110 aaKnown RBP20.74■□□□□ 0.91
USP40-215ENST00000484528 CCNG2Q16589 344 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 PRR30Q53SZ7 412 aaPredicted RBP20.74■□□□□ 0.91
USP40-215ENST00000484528 UNC5DQ6UXZ4 953 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 MED25Q71SY5 747 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 GSTA5Q7RTV2 222 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 FAM26EQ8N5C1 309 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 PROKR1Q8TCW9 393 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 SGSM3Q96HU1 749 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 EIF2B3Q9NR50 452 aaKnown RBP20.74■□□□□ 0.91
USP40-215ENST00000484528 TREX1Q9NSU2 369 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 EURLQ9NYK6 297 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 GPR83Q9NYM4 423 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20.74■□□□□ 0.91
USP40-215ENST00000484528 SRPK3Q9UPE1 567 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 HIVEP3Q5T1R4 2406 aa20.74■□□□□ 0.91
USP40-215ENST00000484528 MASP2O00187 686 aa20.73■□□□□ 0.91
USP40-215ENST00000484528 VPS4BO75351 444 aa20.73■□□□□ 0.91
USP40-215ENST00000484528 SORBS2O94875 1100 aaKnown RBP20.73■□□□□ 0.91
USP40-215ENST00000484528 FGGP02679 453 aa20.73■□□□□ 0.91
USP40-215ENST00000484528 GNLYP22749 145 aa20.73■□□□□ 0.91
USP40-215ENST00000484528 MGAT1P26572 445 aa20.73■□□□□ 0.91
USP40-215ENST00000484528 BDKRB1P46663 353 aa20.73■□□□□ 0.91
USP40-215ENST00000484528 TTPAP49638 278 aa20.73■□□□□ 0.91
USP40-215ENST00000484528 EIF3BP55884 814 aaKnown RBP20.73■□□□□ 0.91
USP40-215ENST00000484528 NKAIN1Q4KMZ8 207 aa20.73■□□□□ 0.91
USP40-215ENST00000484528 TLDC1Q6P9B6 456 aa20.73■□□□□ 0.91
USP40-215ENST00000484528 CES3Q6UWW8 571 aa20.73■□□□□ 0.91
USP40-215ENST00000484528 SKA2Q8WVK7 121 aaPredicted RBP20.73■□□□□ 0.91
USP40-215ENST00000484528 C17orf62Q9BQA9 187 aa20.73■□□□□ 0.91
USP40-215ENST00000484528 NDC1Q9BTX1 674 aa20.73■□□□□ 0.91
USP40-215ENST00000484528 SYBUQ9NX95 663 aa20.73■□□□□ 0.91
USP40-215ENST00000484528 VPS4AQ9UN37 437 aa20.73■□□□□ 0.91
USP40-215ENST00000484528 NFS1Q9Y697 457 aa20.73■□□□□ 0.91
USP40-215ENST00000484528 MDC1Q14676 2089 aaKnown RBP20.73■□□□□ 0.91
USP40-215ENST00000484528 SLCO2B1O94956 709 aa20.72■□□□□ 0.91
USP40-215ENST00000484528 GRIA3P42263 894 aa20.72■□□□□ 0.91
USP40-215ENST00000484528 CCSMST1Q4G0I0 132 aa20.72■□□□□ 0.91
USP40-215ENST00000484528 JMJD6Q6NYC1 403 aaPredicted RBP20.72■□□□□ 0.91
USP40-215ENST00000484528 MCATQ8IVS2 390 aaKnown RBP20.72■□□□□ 0.91
USP40-215ENST00000484528 OR2L8Q8NGY9 312 aa20.72■□□□□ 0.91
USP40-215ENST00000484528 P2RY12Q9H244 342 aa20.72■□□□□ 0.91
USP40-215ENST00000484528 BFARQ9NZS9 450 aa20.72■□□□□ 0.91
USP40-215ENST00000484528 GNPTGQ9UJJ9 305 aa20.72■□□□□ 0.91
USP40-215ENST00000484528 SLC39A10Q9ULF5 831 aa20.72■□□□□ 0.91
USP40-215ENST00000484528 CNTRLQ7Z7A1 2325 aa20.72■□□□□ 0.91
USP40-215ENST00000484528 GOLGA8KD6RF30 607 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 GOLGA8TH3BQL2 631 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 DPM1O60762 260 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 NDUFS3O75489 264 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 ALAS2P22557 587 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 MCM3P25205 808 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 SF1Q15637 639 aaKnown RBP20.71■□□□□ 0.91
USP40-215ENST00000484528 SLC6A19Q695T7 634 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 FCRL6Q6DN72 434 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 DRICH1Q6PGQ1 229 aaPredicted RBP20.71■□□□□ 0.91
USP40-215ENST00000484528 CNSTQ6PJW8 725 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 TTLL10Q6ZVT0 673 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 RBMXL3Q8N7X1 1067 aaKnown RBP20.71■□□□□ 0.91
USP40-215ENST00000484528 Q8NA96 180 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 OR2Y1Q8NGV0 311 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 GSDMBQ8TAX9 411 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 FAM136AQ96C01 138 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 MFSD3Q96ES6 412 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 PANX3Q96QZ0 392 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 IL22Q9GZX6 179 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 SLC22A11Q9NSA0 550 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 MAP10Q9P2G4 905 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 TTC7AQ9ULT0 858 aaPredicted RBP20.71■□□□□ 0.91
USP40-215ENST00000484528 DRG1Q9Y295 367 aaKnown RBP20.71■□□□□ 0.91
USP40-215ENST00000484528 MAP4K5Q9Y4K4 846 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 PCDHGB7Q9Y5F8 929 aa20.71■□□□□ 0.91
USP40-215ENST00000484528 TCRBV7S3A2A0A539 114 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 RASGRF2O14827 1237 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 CEP104O60308 925 aa20.7■□□□□ 0.9
USP40-215ENST00000484528 VAPBO95292 243 aa20.7■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms