RNA–Protein interactions for RNA: ENST00000478573.6

CDC42BPA-212, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5

Gene CDC42BPA, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-212ENST00000478573 RPN1P04843 607 aaKnown RBP3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 LINGO3P0C6S8 592 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 LINC00271P0C7V0 271 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 AMD1P17707 334 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 CORO1AP31146 461 aaKnown RBP3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 RAB28P51157 221 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 CDH13P55290 713 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 SNRPEP62304 92 aaKnown RBP3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 PDE1BQ01064 536 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 UBE2V1Q13404 147 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 COG2Q14746 738 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 KRBOX4Q5JUW0 171 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 TRNP1Q6NT89 227 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 IL27RAQ6UWB1 636 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 ZNF704Q6ZNC4 412 aaPredicted RBP3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 EXOC3L1Q86VI1 746 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 ZNF34Q8IZ26 560 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 C1orf87Q8N0U7 546 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 LMNTD1Q8N9Z9 388 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 Q8NFD4 153 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 TBC1D16Q8TBP0 767 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 WDR20Q8TBZ3 569 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 TEKT4Q8WW24 435 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 SLC44A1Q8WWI5 657 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 TANKQ92844 425 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 ABTB1Q969K4 478 aaPredicted RBP3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 PIGTQ969N2 578 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 HDAC11Q96DB2 347 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 ERLEC1Q96DZ1 483 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 SPACA9Q96E40 222 aaPredicted RBP3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 SCMH1Q96GD3 660 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 C3orf30Q96M34 536 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 MS4A10Q96PG2 267 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 CSF3RQ99062 836 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 SLC25A23Q9BV35 468 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 GAREM1Q9H706 876 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 TMEM30AQ9NV96 361 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 NME7Q9Y5B8 376 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 PALLDQ8WX93 1383 aa3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 DDX60Q8IY21 1712 aaKnown RBP3.87□□□□□ -1.79
CDC42BPA-212ENST00000478573 TO15178 435 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 IPO8O15397 1037 aaKnown RBP3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 ZBTB43O43298 467 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 TBCAO75347 108 aaKnown RBP3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 TOMM70O94826 608 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 KDM4BO94953 1096 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 HSP90AB1P08238 724 aaKnown RBP3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 PFKFB1P16118 471 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 MC5RP33032 325 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 MATR3P43243 847 aaKnown RBP eCLIP3.86□□□□□ -1.793e-7■■■□□ 14.8
CDC42BPA-212ENST00000478573 CDK3Q00526 305 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 RUNX1T1Q06455 604 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 RALGDSQ12967 914 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 SCARB2Q14108 478 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 SLC15A2Q16348 729 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 LETM2Q2VYF4 491 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 CEP85LQ5SZL2 805 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 ARMC4Q5T2S8 1044 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 HECTD3Q5T447 861 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 ZNF449Q6P9G9 518 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 RHBDF2Q6PJF5 856 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 FAM198BQ6UWH4 519 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 ZNF771Q7L3S4 317 aaPredicted RBP3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 IQCHQ86VS3 1027 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 RNF113BQ8IZP6 322 aaKnown RBP3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 FBXO39Q8N4B4 442 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 C1orf52Q8N6N3 182 aaKnown RBP3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 PI4KAP1Q8N8J0 262 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 BBS10Q8TAM1 723 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 SECTM1Q8WVN6 248 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 WBP2Q969T9 261 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 LINC00615Q96LM1 132 aaPredicted RBP3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 ZNF385AQ96PM9 386 aaKnown RBP3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 RAB3IPQ96QF0 476 aaPredicted RBP3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 OR6C1Q96RD1 312 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 PCYT2Q99447 389 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 NAA11Q9BSU3 229 aaPredicted RBP3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 ABHD6Q9BV23 337 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 GOLPH3LQ9H4A5 285 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 ST6GALNAC4Q9H4F1 302 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 NOL11Q9H8H0 719 aaKnown RBP3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 EQTNQ9NQ60 294 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 A0A1B0GUL6 1792 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 PSME4Q14997 1843 aa3.86□□□□□ -1.79
CDC42BPA-212ENST00000478573 OR2M5A3KFT3 312 aa3.85□□□□□ -1.79
CDC42BPA-212ENST00000478573 HEPACAM2A8MVW5 462 aa3.85□□□□□ -1.79
CDC42BPA-212ENST00000478573 PRAC2D3DTV9 90 aa3.85□□□□□ -1.79
CDC42BPA-212ENST00000478573 CCDC188H7C350 402 aa3.85□□□□□ -1.79
CDC42BPA-212ENST00000478573 PLK4O00444 970 aa3.85□□□□□ -1.79
CDC42BPA-212ENST00000478573 SPRY1O43609 319 aaPredicted RBP3.85□□□□□ -1.79
CDC42BPA-212ENST00000478573 BUD23O43709 281 aaKnown RBP3.85□□□□□ -1.79
CDC42BPA-212ENST00000478573 XPNPEP2O43895 674 aa3.85□□□□□ -1.79
CDC42BPA-212ENST00000478573 SSX4O60224 188 aa3.85□□□□□ -1.79
CDC42BPA-212ENST00000478573 MED24O75448 989 aa3.85□□□□□ -1.79
CDC42BPA-212ENST00000478573 TADA2AO75478 443 aa3.85□□□□□ -1.79
CDC42BPA-212ENST00000478573 DANCRP0C864 163 aa3.85□□□□□ -1.79
CDC42BPA-212ENST00000478573 IFNAR1P17181 557 aa3.85□□□□□ -1.79
CDC42BPA-212ENST00000478573 PTAFRP25105 342 aa3.85□□□□□ -1.79
CDC42BPA-212ENST00000478573 USP8P40818 1118 aa3.85□□□□□ -1.79
CDC42BPA-212ENST00000478573 TMPOP42166 694 aaKnown RBP3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms