RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 VWA5B1Q5TIE3 1220 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 C1orf189Q5VU69 101 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 MLIPQ5VWP3 458 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 FCRL6Q6DN72 434 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 PPP1R32Q7Z5V6 425 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 PRUNE1Q86TP1 453 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 FAM20CQ8IXL6 584 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 ZNF655Q8N720 491 aaPredicted RBP11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 EFCAB3Q8N7B9 438 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 DNAAF3Q8N9W5 541 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 ASZ1Q8WWH4 475 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 PTERQ96BW5 349 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 P2RY12Q9H244 342 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 TREX1Q9NSU2 369 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 MARCH4Q9P2E8 410 aaPredicted RBP11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 IMPACTQ9P2X3 320 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 ZGRF1Q86YA3 2104 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 CELSR2Q9HCU4 2923 aa11.78□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 IQCF5A8MTL0 148 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ISM1B1AKI9 464 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PRMT5O14744 637 aaPredicted RBP11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 KDM1AO60341 852 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 IGHEP01854 428 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 RNF224P0DH78 156 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MAGP20916 626 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 VARSP26640 1264 aaKnown RBP11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 OTX2P32243 289 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 FOXL2P58012 376 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 HSPA14Q0VDF9 509 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 FHL5Q5TD97 284 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 DRICH1Q6PGQ1 229 aaPredicted RBP11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 UNC5DQ6UXZ4 953 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 HOOK3Q86VS8 718 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MCATQ8IVS2 390 aaKnown RBP11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TXLNBQ8N3L3 684 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 GALNT16Q8N428 558 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 LMNTD1Q8N9Z9 388 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 OR6P1Q8NGX9 317 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 OR2L8Q8NGY9 312 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 HMGCLL1Q8TB92 370 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 C1orf54Q8WWF1 131 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 INPP5DQ92835 1189 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 FER1L6-AS2Q96M78 137 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TTC1Q99614 292 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MFRPQ9BY79 579 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SLC7A5P2Q9GIP4 190 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SLC26A1Q9H2B4 701 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CHRAC1Q9NRG0 131 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 RAB6BQ9NRW1 208 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CUEDC1Q9NWM3 386 aaPredicted RBP11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 P4HTMQ9NXG6 502 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 IFT80Q9P2H3 777 aaPredicted RBP11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 DRG1Q9Y295 367 aaKnown RBP11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 KLHL20Q9Y2M5 609 aa11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PTRH2Q9Y3E5 179 aaKnown RBP11.77□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SVILO95425 2214 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 DIDO1Q9BTC0 2240 aaKnown RBP11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 FITM1A5D6W6 292 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 F8W8V4 182 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MASP2O00187 686 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 RASGRF2O14827 1237 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 FKBP9O95302 570 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CBX6O95503 412 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 S1PR4O95977 384 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 IFNB1P01574 187 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ALBP02768 609 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PTMAP06454 111 aaKnown RBP11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 RPS3P23396 243 aaKnown RBP eCLIP11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ARNTP27540 789 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CDC25BP30305 580 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 RPL22P35268 128 aaKnown RBP11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PPARGP37231 505 aaPredicted RBP11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 FOLR3P41439 243 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CSE1LP55060 971 aaKnown RBP11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 GBX1Q14549 363 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CCNG2Q16589 344 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SYTL3Q4VX76 610 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 FASTKD1Q53R41 847 aaKnown RBP11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PCID2Q5JVF3 399 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MEI1Q5TIA1 1274 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 YOD1Q5VVQ6 348 aaPredicted RBP11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 FIGLAQ6QHK4 219 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 IGFL2Q6UWQ7 119 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PPP1R21Q6ZMI0 780 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 COX15Q7KZN9 410 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 OVCH1Q7RTY7 1134 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 LDB1Q86U70 411 aaPredicted RBP11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 DCUN1D3Q8IWE4 304 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 N4BP2L2Q92802 583 aaPredicted RBP11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ZUFSPQ96AP4 578 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 FKBP10Q96AY3 582 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SLC22A18Q96BI1 424 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SNRNP40Q96DI7 357 aaKnown RBP11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 C19orf60Q96EN9 201 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 BIRC8Q96P09 236 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 IL17FQ96PD4 163 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SPSB2Q99619 263 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 NDC1Q9BTX1 674 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 WDR54Q9H977 334 aa11.76□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ZBTB20Q9HC78 741 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms