RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 HPS6Q86YV9 775 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 LMNTD2Q8IXW0 634 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 IQCKQ8N0W5 287 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 CNPY4Q8N129 248 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 DDHD1Q8NEL9 900 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 OR4K2Q8NGD2 314 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 OR13J1Q8NGT2 312 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 CALML6Q8TD86 181 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 ZNF501Q96CX3 271 aaPredicted RBP8.81□□□□□ -1
SF3A1-206ENST00000471037 SGSM3Q96HU1 749 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 DNAJC1Q96KC8 554 aaKnown RBP8.81□□□□□ -1
SF3A1-206ENST00000471037 PKNOX2Q96KN3 472 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 LRFN5Q96NI6 719 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 CYTH2Q99418 400 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 TRIM56Q9BRZ2 755 aaKnown RBP8.81□□□□□ -1
SF3A1-206ENST00000471037 FAM167BQ9BTA0 163 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 ING2Q9H160 280 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 ACBD3Q9H3P7 528 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 ACSS2Q9NR19 701 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 C20orf96Q9NUD7 363 aaPredicted RBP8.81□□□□□ -1
SF3A1-206ENST00000471037 SLC2A6Q9UGQ3 507 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 FARSAQ9Y285 508 aaKnown RBP8.81□□□□□ -1
SF3A1-206ENST00000471037 BTRCQ9Y297 605 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 DNMT3AQ9Y6K1 912 aaPredicted RBP8.81□□□□□ -1
SF3A1-206ENST00000471037 NOTCH2Q04721 2471 aa8.81□□□□□ -1
SF3A1-206ENST00000471037 UTP20O75691 2785 aaKnown RBP8.8□□□□□ -1
SF3A1-206ENST00000471037 MYO9AB2RTY4 2548 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 EXOC1LA0A1B0GW35 172 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 UBA6A0AVT1 1052 aaPredicted RBP8.8□□□□□ -1
SF3A1-206ENST00000471037 CCDC78A2IDD5 438 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 FAM159BA6NKW6 160 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 MAP2K7O14733 419 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 BUD23O43709 281 aaKnown RBP8.8□□□□□ -1
SF3A1-206ENST00000471037 DPM1O60762 260 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 SEMA7AO75326 666 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 SCRG1O75711 98 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 POP7O75817 140 aaKnown RBP8.8□□□□□ -1
SF3A1-206ENST00000471037 VAPBO95292 243 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 ZBTB11O95625 1053 aaPredicted RBP8.8□□□□□ -1
SF3A1-206ENST00000471037 RAB40ALP0C0E4 278 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 RNF224P0DH78 156 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 MTHFD1P11586 935 aaKnown RBP8.8□□□□□ -1
SF3A1-206ENST00000471037 VARSP26640 1264 aaKnown RBP8.8□□□□□ -1
SF3A1-206ENST00000471037 ARNTP27540 789 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 SPAM1P38567 509 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 ARL4DP49703 201 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 CCL11P51671 97 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 IFFO1Q0D2I5 559 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 CHAF1BQ13112 559 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 GPS2Q13227 327 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 THOC5Q13769 683 aaKnown RBP8.8□□□□□ -1
SF3A1-206ENST00000471037 PLCL1Q15111 1095 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 INPP5JQ15735 1006 aaPredicted RBP8.8□□□□□ -1
SF3A1-206ENST00000471037 KBTBD12Q3ZCT8 623 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 LDLRAP1Q5SW96 308 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 UBAP2Q5T6F2 1119 aaKnown RBP8.8□□□□□ -1
SF3A1-206ENST00000471037 METRNLQ641Q3 311 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 TRMT10BQ6PF06 316 aaKnown RBP8.8□□□□□ -1
SF3A1-206ENST00000471037 FAM83HQ6ZRV2 1179 aaPredicted RBP8.8□□□□□ -1
SF3A1-206ENST00000471037 KCNMB4Q86W47 210 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 OOSP2Q86WS3 158 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 LRRC6Q86X45 466 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 TMEM126BQ8IUX1 230 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 CNTN4Q8IWV2 1026 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 RASGEF1AQ8N9B8 481 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 SLC38A9Q8NBW4 561 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 OR13C4Q8NGS5 318 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 OR6P1Q8NGX9 317 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 GDAP1Q8TB36 358 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 ZFPM2Q8WW38 1151 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 MR1Q95460 341 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 HDAC10Q969S8 669 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 CDKN2AIPNLQ96HQ2 116 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 TMEM109Q9BVC6 243 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 ROPN1BQ9BZX4 212 aaPredicted RBP8.8□□□□□ -1
SF3A1-206ENST00000471037 ROPN1Q9HAT0 212 aaPredicted RBP8.8□□□□□ -1
SF3A1-206ENST00000471037 BPIFA1Q9NP55 256 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 IL26Q9NPH9 171 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 PPANQ9NQ55 473 aaKnown RBP8.8□□□□□ -1
SF3A1-206ENST00000471037 SMOXQ9NWM0 555 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 HRASLS2Q9NWW9 162 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 NSMCE4AQ9NXX6 385 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 ZFATQ9P243 1243 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 PSMD13Q9UNM6 376 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 ZNF451Q9Y4E5 1061 aa8.8□□□□□ -1
SF3A1-206ENST00000471037 SHANK1Q9Y566 2161 aa8.79□□□□□ -1
SF3A1-206ENST00000471037 CCDC162PA2VCL2 907 aa8.79□□□□□ -1
SF3A1-206ENST00000471037 KLHL33A6NCF5 533 aa8.79□□□□□ -1
SF3A1-206ENST00000471037 DDAH2O95865 285 aa8.79□□□□□ -1
SF3A1-206ENST00000471037 GOT2P00505 430 aaKnown RBP8.79□□□□□ -1
SF3A1-206ENST00000471037 C1QAP02745 245 aa8.79□□□□□ -1
SF3A1-206ENST00000471037 SHBGP04278 402 aa8.79□□□□□ -1
SF3A1-206ENST00000471037 KLK3P07288 261 aaPredicted RBP8.79□□□□□ -1
SF3A1-206ENST00000471037 MSL3P1P0C860 447 aa8.79□□□□□ -1
SF3A1-206ENST00000471037 ERVK-10P10266 1014 aa8.79□□□□□ -1
SF3A1-206ENST00000471037 RORAP35398 523 aa8.79□□□□□ -1
SF3A1-206ENST00000471037 TMPRSS15P98073 1019 aa8.79□□□□□ -1
SF3A1-206ENST00000471037 CACNG1Q06432 222 aa8.79□□□□□ -1
SF3A1-206ENST00000471037 ILF2Q12905 390 aaKnown RBP8.79□□□□□ -1
SF3A1-206ENST00000471037 ITGA9Q13797 1035 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms