RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 PRAMEP78395 509 aa20.27■□□□□ 0.84
COL9A3-207ENST00000467819 EIF2S3LQ2VIR3 472 aaKnown RBP20.27■□□□□ 0.84
COL9A3-207ENST00000467819 FASTKD1Q53R41 847 aaKnown RBP20.27■□□□□ 0.84
COL9A3-207ENST00000467819 DNAJC21Q5F1R6 531 aaKnown RBP20.27■□□□□ 0.84
COL9A3-207ENST00000467819 DCAF10Q5QP82 559 aa20.27■□□□□ 0.84
COL9A3-207ENST00000467819 ZNF534Q76KX8 674 aa20.27■□□□□ 0.84
COL9A3-207ENST00000467819 PRUNE1Q86TP1 453 aa20.27■□□□□ 0.84
COL9A3-207ENST00000467819 TMEM139Q8IV31 216 aa20.27■□□□□ 0.84
COL9A3-207ENST00000467819 SLC22A15Q8IZD6 547 aa20.27■□□□□ 0.84
COL9A3-207ENST00000467819 GALNT16Q8N428 558 aa20.27■□□□□ 0.84
COL9A3-207ENST00000467819 LINC01555Q8NAE3 123 aa20.27■□□□□ 0.84
COL9A3-207ENST00000467819 C19orf60Q96EN9 201 aa20.27■□□□□ 0.84
COL9A3-207ENST00000467819 IL17FQ96PD4 163 aa20.27■□□□□ 0.84
COL9A3-207ENST00000467819 CASS4Q9NQ75 786 aa20.27■□□□□ 0.84
COL9A3-207ENST00000467819 P4HTMQ9NXG6 502 aa20.27■□□□□ 0.84
COL9A3-207ENST00000467819 EURLQ9NYK6 297 aa20.27■□□□□ 0.84
COL9A3-207ENST00000467819 NOTCH2Q04721 2471 aa20.27■□□□□ 0.83
COL9A3-207ENST00000467819 IQCF5A8MTL0 148 aa20.26■□□□□ 0.83
COL9A3-207ENST00000467819 SUN1O94901 812 aa20.26■□□□□ 0.83
COL9A3-207ENST00000467819 CD63P08962 238 aa20.26■□□□□ 0.83
COL9A3-207ENST00000467819 RNF224P0DH78 156 aa20.26■□□□□ 0.83
COL9A3-207ENST00000467819 ALAS2P22557 587 aa20.26■□□□□ 0.83
COL9A3-207ENST00000467819 ADRA1DP25100 572 aa20.26■□□□□ 0.83
COL9A3-207ENST00000467819 STIP1P31948 543 aaKnown RBP20.26■□□□□ 0.83
COL9A3-207ENST00000467819 MYBPC3Q14896 1274 aa20.26■□□□□ 0.83
COL9A3-207ENST00000467819 OASLQ15646 514 aaKnown RBP20.26■□□□□ 0.83
COL9A3-207ENST00000467819 PLEKHN1Q494U1 663 aaPredicted RBP20.26■□□□□ 0.83
COL9A3-207ENST00000467819 SEL1L2Q5TEA6 688 aa20.26■□□□□ 0.83
COL9A3-207ENST00000467819 MRPL14Q6P1L8 145 aaKnown RBP20.26■□□□□ 0.83
COL9A3-207ENST00000467819 PPP1R32Q7Z5V6 425 aa20.26■□□□□ 0.83
COL9A3-207ENST00000467819 LDB1Q86U70 411 aaPredicted RBP20.26■□□□□ 0.83
COL9A3-207ENST00000467819 TXLNBQ8N3L3 684 aa20.26■□□□□ 0.83
COL9A3-207ENST00000467819 PTERQ96BW5 349 aa20.26■□□□□ 0.83
COL9A3-207ENST00000467819 RANBP9Q96S59 729 aa20.26■□□□□ 0.83
COL9A3-207ENST00000467819 TSSK1BQ9BXA7 367 aa20.26■□□□□ 0.83
COL9A3-207ENST00000467819 ZNF148Q9UQR1 794 aa20.26■□□□□ 0.83
COL9A3-207ENST00000467819 TCAF1Q9Y4C2 921 aa20.26■□□□□ 0.83
COL9A3-207ENST00000467819 IGHEP01854 428 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 ALPPP05187 535 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 UMODP07911 640 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 ETS1P14921 441 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 VARSP26640 1264 aaKnown RBP20.25■□□□□ 0.83
COL9A3-207ENST00000467819 ACVR1Q04771 509 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 SNX1Q13596 522 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 CYP2A13Q16696 494 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 IQCKQ8N0W5 287 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 KRT222Q8N1A0 295 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 PRR7Q8TB68 274 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 C1orf54Q8WWF1 131 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 ASZ1Q8WWH4 475 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 DLG3Q92796 817 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 RAB6BQ9NRW1 208 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20.25■□□□□ 0.83
COL9A3-207ENST00000467819 RIMKLBQ9ULI2 386 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 CNTRLQ7Z7A1 2325 aa20.25■□□□□ 0.83
COL9A3-207ENST00000467819 GPC4O75487 556 aa20.24■□□□□ 0.83
COL9A3-207ENST00000467819 RPN2P04844 631 aa20.24■□□□□ 0.83
COL9A3-207ENST00000467819 APOA4P06727 396 aa20.24■□□□□ 0.83
COL9A3-207ENST00000467819 CD9P21926 228 aa20.24■□□□□ 0.83
COL9A3-207ENST00000467819 PPARGP37231 505 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-207ENST00000467819 TTLL10Q6ZVT0 673 aa20.24■□□□□ 0.83
COL9A3-207ENST00000467819 MCATQ8IVS2 390 aaKnown RBP20.24■□□□□ 0.83
COL9A3-207ENST00000467819 DCUN1D3Q8IWE4 304 aa20.24■□□□□ 0.83
COL9A3-207ENST00000467819 CISD2Q8N5K1 135 aaKnown RBP20.24■□□□□ 0.83
COL9A3-207ENST00000467819 PPHLN1Q8NEY8 458 aaKnown RBP20.24■□□□□ 0.83
COL9A3-207ENST00000467819 SNRNP40Q96DI7 357 aaKnown RBP20.24■□□□□ 0.83
COL9A3-207ENST00000467819 MENTQ9BUN1 341 aa20.24■□□□□ 0.83
COL9A3-207ENST00000467819 CARD6Q9BX69 1037 aa20.24■□□□□ 0.83
COL9A3-207ENST00000467819 ZNF552Q9H707 407 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-207ENST00000467819 SLC22A11Q9NSA0 550 aa20.24■□□□□ 0.83
COL9A3-207ENST00000467819 ANAPC5Q9UJX4 755 aa20.24■□□□□ 0.83
COL9A3-207ENST00000467819 B3GNT3Q9Y2A9 372 aa20.24■□□□□ 0.83
COL9A3-207ENST00000467819 A1L4Q6 167 aa20.23■□□□□ 0.83
COL9A3-207ENST00000467819 APRTP07741 180 aa20.23■□□□□ 0.83
COL9A3-207ENST00000467819 GRB7Q14451 532 aa20.23■□□□□ 0.83
COL9A3-207ENST00000467819 TMED2Q15363 201 aa20.23■□□□□ 0.83
COL9A3-207ENST00000467819 NR6A1Q15406 480 aa20.23■□□□□ 0.83
COL9A3-207ENST00000467819 AARS2Q5JTZ9 985 aaKnown RBP20.23■□□□□ 0.83
COL9A3-207ENST00000467819 UNC5DQ6UXZ4 953 aa20.23■□□□□ 0.83
COL9A3-207ENST00000467819 NLRP9Q7RTR0 991 aa20.23■□□□□ 0.83
COL9A3-207ENST00000467819 SLC22A18Q96BI1 424 aa20.23■□□□□ 0.83
COL9A3-207ENST00000467819 FRMD8P1Q9BZ68 369 aaPredicted RBP20.23■□□□□ 0.83
COL9A3-207ENST00000467819 ILKAPQ9H0C8 392 aaPredicted RBP20.23■□□□□ 0.83
COL9A3-207ENST00000467819 CATSPERZQ9NTU4 200 aa20.23■□□□□ 0.83
COL9A3-207ENST00000467819 ASF1BQ9NVP2 202 aa20.23■□□□□ 0.83
COL9A3-207ENST00000467819 CUEDC1Q9NWM3 386 aaPredicted RBP20.23■□□□□ 0.83
COL9A3-207ENST00000467819 MARCH4Q9P2E8 410 aaPredicted RBP20.23■□□□□ 0.83
COL9A3-207ENST00000467819 SLC39A10Q9ULF5 831 aa20.23■□□□□ 0.83
COL9A3-207ENST00000467819 DOPEY1Q5JWR5 2465 aa20.22■□□□□ 0.83
COL9A3-207ENST00000467819 CENPEQ02224 2701 aa20.22■□□□□ 0.83
COL9A3-207ENST00000467819 A0A1B0GX78 115 aa20.22■□□□□ 0.83
COL9A3-207ENST00000467819 ALOX12BO75342 701 aa20.22■□□□□ 0.83
COL9A3-207ENST00000467819 S1PR4O95977 384 aa20.22■□□□□ 0.83
COL9A3-207ENST00000467819 ITGAXP20702 1163 aa20.22■□□□□ 0.83
COL9A3-207ENST00000467819 MCM3P25205 808 aa20.22■□□□□ 0.83
COL9A3-207ENST00000467819 AOAHP28039 575 aa20.22■□□□□ 0.83
COL9A3-207ENST00000467819 GRIA3P42263 894 aa20.22■□□□□ 0.83
COL9A3-207ENST00000467819 ARSFP54793 590 aa20.22■□□□□ 0.83
COL9A3-207ENST00000467819 SF1Q15637 639 aaKnown RBP20.22■□□□□ 0.83
COL9A3-207ENST00000467819 FCRL6Q6DN72 434 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms