RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 HIST1H2AHQ96KK5 128 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 HIST1H2AJQ99878 128 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 H2AFJQ9BTM1 129 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 NPLQ9BXD5 320 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-217ENST00000466159 UGT2B28Q9BY64 529 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 PAIP1Q9H074 479 aaKnown RBP8.72□□□□□ -1.01
SYNE1-217ENST00000466159 ATG10Q9H0Y0 220 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 KAT8Q9H7Z6 458 aaKnown RBP8.72□□□□□ -1.01
SYNE1-217ENST00000466159 LTB4R2Q9NPC1 389 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 SERHLQ9NQF3 203 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 KLHL42Q9P2K6 505 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 LTBP2Q14767 1821 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 MYO7AQ13402 2215 aa8.72□□□□□ -1.01
SYNE1-217ENST00000466159 TRBV5-3A0A0A0MS03 114 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 B4GAT1O43505 415 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 NUAK1O60285 661 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 PRKD3O94806 890 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 C8GP07360 202 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 ELK4P28324 431 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 CDKN2CP42773 168 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 ALDH3A2P51648 485 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 CLDN8P56748 225 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 HTRA3P83110 453 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 DAG1Q14118 895 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 PGS1Q32NB8 556 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 TMEM259Q4ZIN3 620 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 ANKRD34AQ69YU3 496 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 LRRC70Q7Z2Q7 622 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 HSD11B1LQ7Z5J1 315 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 CLVS1Q8IUQ0 354 aaPredicted RBP8.71□□□□□ -1.01
SYNE1-217ENST00000466159 ALDH16A1Q8IZ83 802 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 ZNF784Q8NCA9 323 aaPredicted RBP8.71□□□□□ -1.01
SYNE1-217ENST00000466159 OR2A12Q8NGT7 310 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 ADAMTS16Q8TE57 1224 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 SORCS1Q8WY21 1168 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 SLC47A1Q96FL8 570 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 ZNF641Q96N77 438 aaPredicted RBP8.71□□□□□ -1.01
SYNE1-217ENST00000466159 PHF12Q96QT6 1004 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 BBS2Q9BXC9 721 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 LINC00597Q9H2U6 94 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 SMURF2Q9HAU4 748 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 ASAH2Q9NR71 780 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 EBF1Q9UH73 591 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 PPT2Q9UMR5 302 aa8.71□□□□□ -1.01
SYNE1-217ENST00000466159 OR2AG2A6NM03 316 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 UPK3BL1B0FP48 263 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 UPK3BL2E5RIL1 263 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 G3V2T6 193 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 GFYI3L273 518 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 CST1P01037 141 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 C1QCP02747 245 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 PABPC1P11940 636 aaKnown RBP8.71□□□□□ -1.02
SYNE1-217ENST00000466159 SDC1P18827 310 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 S100A3P33764 101 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 SHMT2P34897 504 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 SLC6A12P48065 614 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 ESRRGP62508 458 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 PMS2P3Q13401 168 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 PON2Q15165 354 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 ZBED5Q49AG3 693 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 CDKL4Q5MAI5 379 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 TMEM215Q68D42 235 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 GDPD4Q6W3E5 623 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 Q6ZVL8 140 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 ADIPOR2Q86V24 386 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 GALNT13Q8IUC8 556 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 ZDHHC13Q8IUH4 622 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 MICU2Q8IYU8 434 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 ELMOD1Q8N336 334 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 OR10Q1Q8NGQ4 319 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 NETO1Q8TDF5 533 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 NCLNQ969V3 563 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 APOLD1Q96LR9 279 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 SH3GL1Q99961 368 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 MTG2Q9H4K7 406 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 GPRC5BQ9NZH0 403 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 CDC14AQ9UNH5 594 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 SNX6Q9UNH7 406 aa8.71□□□□□ -1.02
SYNE1-217ENST00000466159 TMEM202A6NGA9 273 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 H0YAE9 185 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 SGTAO43765 313 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 NOBOXO60393 691 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 CREG1O75629 220 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 THRBP10828 461 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 CDK4P11802 303 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 MYCLP1P12525 358 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-217ENST00000466159 TYRP14679 529 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 PTPN6P29350 595 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 PPM1AP35813 382 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 ETV3P41162 512 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 HALP42357 657 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 GZMMP51124 257 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 CCDC149Q6ZUS6 474 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 OTOP2Q7RTS6 562 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 ERI1Q8IV48 349 aaKnown RBP8.7□□□□□ -1.02
SYNE1-217ENST00000466159 PLPP6Q8IY26 295 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 NAT16Q8N8M0 369 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 KLHL23Q8NBE8 558 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 CYB5D2Q8WUJ1 264 aa8.7□□□□□ -1.02
SYNE1-217ENST00000466159 ELMO1Q92556 727 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms