RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 MARC1Q5VT66 337 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 ZNF544Q6NX49 715 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 LINC00299Q6ZSB3 139 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 NLRP8Q86W28 1048 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 HIPK1Q86Z02 1210 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 ELMOD2Q8IZ81 293 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 CACTIN-AS1Q8N1I8 211 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 GLB1L3Q8NCI6 653 aaPredicted RBP11.44□□□□□ -0.58
CPSF3-202ENST00000460593 C3orf58Q8NDZ4 430 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 SEMA3CQ99985 751 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 BPIFA1Q9NP55 256 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 RPRD1BQ9NQG5 326 aaKnown RBP11.44□□□□□ -0.58
CPSF3-202ENST00000460593 KRT84Q9NSB2 600 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 HS3ST4Q9Y661 456 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 LOC105371267A0A1B0GV96 52 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 CLDN24A6NM45 220 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 PTHP01270 115 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 IFNA8P32881 189 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 SLC15A1P46059 708 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 GNG2P59768 71 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 ARTNQ5T4W7 220 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 SDHAF4Q5VUM1 108 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 SLX4IPQ5VYV7 408 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 CAPN13Q6MZZ7 669 aaPredicted RBP11.44□□□□□ -0.58
CPSF3-202ENST00000460593 MRNIPQ6NTE8 343 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 NOTUMQ6P988 496 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 OR8J3Q8NGG0 315 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 PGAP3Q96FM1 320 aaPredicted RBP11.44□□□□□ -0.58
CPSF3-202ENST00000460593 PYURFQ96I23 114 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 EXOC2Q96KP1 924 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 OR52E6Q96RD3 313 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 PHOX2BQ99453 314 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 C16orf70Q9BSU1 422 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 TIGARQ9NQ88 270 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 RAD18Q9NS91 495 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 TMEM39AQ9NV64 488 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 BTBD3Q9Y2F9 522 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 DERAQ9Y315 318 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 MSH3P20585 1137 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 PPP3CCP48454 512 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 STC1P52823 247 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 TRIM60Q495X7 471 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 SPANXN2Q5MJ10 180 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 SHQ1Q6PI26 577 aaKnown RBP11.44□□□□□ -0.58
CPSF3-202ENST00000460593 SUSD1Q6UWL2 747 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 ZNF517Q6ZMY9 492 aaPredicted RBP11.44□□□□□ -0.58
CPSF3-202ENST00000460593 GPSM1Q86YR5 675 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 AMER2Q8N7J2 671 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 JPH3Q8WXH2 748 aaPredicted RBP11.44□□□□□ -0.58
CPSF3-202ENST00000460593 MYLPFQ96A32 169 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 CCDC115Q96NT0 180 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 APOL4Q9BPW4 351 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 DPH2Q9BQC3 489 aaPredicted RBP11.44□□□□□ -0.58
CPSF3-202ENST00000460593 BCL7BQ9BQE9 202 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 ATP13A1Q9HD20 1204 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 TMLHEQ9NVH6 421 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 SAMHD1Q9Y3Z3 626 aaKnown RBP11.44□□□□□ -0.58
CPSF3-202ENST00000460593 ANGPTL3Q9Y5C1 460 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 ZNF236Q9UL36 1845 aa11.44□□□□□ -0.58
CPSF3-202ENST00000460593 SMIM30A4D0T7 59 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 H3BM21 787 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 PDHXO00330 501 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 TREHO43280 583 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 SCO1O75880 301 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 PGRP06401 933 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 ADRA2AP08913 450 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 WEE1P30291 646 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 SLC26A3P40879 764 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 RFX2P48378 723 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 IDH2P48735 452 aaKnown RBP11.43□□□□□ -0.58
CPSF3-202ENST00000460593 FADDQ13158 208 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 BAK1Q16611 211 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 ERAP2Q6P179 960 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 GPR149Q86SP6 731 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 P3H2Q8IVL5 708 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 CCDC117Q8IWD4 279 aaPredicted RBP11.43□□□□□ -0.58
CPSF3-202ENST00000460593 PIANPQ8IYJ0 282 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 UBASH3BQ8TF42 649 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 CEP19Q96LK0 163 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 OR2A14Q96R47 310 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 NUSAP1Q9BXS6 441 aaKnown RBP11.43□□□□□ -0.58
CPSF3-202ENST00000460593 DPY30Q9C005 99 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 CATSPERBQ9H7T0 1116 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 ARNT2Q9HBZ2 717 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 TAS2R13Q9NYV9 303 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 KCNH4Q9UQ05 1017 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 PRELID1Q9Y255 219 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 CASTOR2A6NHX0 329 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 SMLR1H3BR10 107 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 ARNTLO00327 626 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 PTGESO14684 152 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 CNMDO75829 334 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 SERPINF2P08697 491 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 DEFA1P59665 94 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 DEFA3P59666 94 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 RAB41Q5JT25 222 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 SMYD5Q6GMV2 418 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 PAMR1Q6UXH9 720 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 NATD1Q8N6N6 113 aa11.43□□□□□ -0.58
CPSF3-202ENST00000460593 VANGL1Q8TAA9 524 aaPredicted RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms