RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 NADK2Q4G0N4 442 aa21.92■■□□□ 1.1
PTPN4-207ENST00000460162 C1orf189Q5VU69 101 aa21.92■■□□□ 1.1
PTPN4-207ENST00000460162 PTRHD1Q6GMV3 140 aaKnown RBP21.92■■□□□ 1.1
PTPN4-207ENST00000460162 LDB1Q86U70 411 aaPredicted RBP21.92■■□□□ 1.1
PTPN4-207ENST00000460162 KRT222Q8N1A0 295 aa21.92■■□□□ 1.1
PTPN4-207ENST00000460162 FAM26EQ8N5C1 309 aa21.92■■□□□ 1.1
PTPN4-207ENST00000460162 ZNF655Q8N720 491 aaPredicted RBP21.92■■□□□ 1.1
PTPN4-207ENST00000460162 EFCAB3Q8N7B9 438 aa21.92■■□□□ 1.1
PTPN4-207ENST00000460162 FDCSPQ8NFU4 85 aa21.92■■□□□ 1.1
PTPN4-207ENST00000460162 OR2L8Q8NGY9 312 aa21.92■■□□□ 1.1
PTPN4-207ENST00000460162 NDC1Q9BTX1 674 aa21.92■■□□□ 1.1
PTPN4-207ENST00000460162 NUDT9Q9BW91 350 aa21.92■■□□□ 1.1
PTPN4-207ENST00000460162 GPR83Q9NYM4 423 aa21.92■■□□□ 1.1
PTPN4-207ENST00000460162 BFARQ9NZS9 450 aa21.92■■□□□ 1.1
PTPN4-207ENST00000460162 DHCR7Q9UBM7 475 aaKnown RBP21.92■■□□□ 1.1
PTPN4-207ENST00000460162 MRFAP1Q9Y605 127 aa21.92■■□□□ 1.1
PTPN4-207ENST00000460162 USP9XQ93008 2570 aaPredicted RBP21.92■■□□□ 1.1
PTPN4-207ENST00000460162 NAV2Q8IVL1 2488 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 RASGRF2O14827 1237 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 FKBP9O95302 570 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 FGGP02679 453 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 CCDC175P0C221 793 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 OTX2P32243 289 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 NPY2RP49146 381 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 CRADDP78560 199 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 SSPNQ14714 243 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 MLIPQ5VWP3 458 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 GSTA5Q7RTV2 222 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 OR2Y1Q8NGV0 311 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 CFAP61Q8NHU2 1237 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 GSDMBQ8TAX9 411 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 CPT1CQ8TCG5 803 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 DLG3Q92796 817 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 MRM3Q9HC36 420 aaKnown RBP21.91■■□□□ 1.1
PTPN4-207ENST00000460162 INTS7Q9NVH2 962 aaKnown RBP21.91■■□□□ 1.1
PTPN4-207ENST00000460162 EURLQ9NYK6 297 aa21.91■■□□□ 1.1
PTPN4-207ENST00000460162 IFT80Q9P2H3 777 aaPredicted RBP21.91■■□□□ 1.1
PTPN4-207ENST00000460162 PTRH2Q9Y3E5 179 aaKnown RBP21.91■■□□□ 1.1
PTPN4-207ENST00000460162 ZNF185O15231 689 aa21.9■■□□□ 1.1
PTPN4-207ENST00000460162 IGHEP01854 428 aa21.9■■□□□ 1.1
PTPN4-207ENST00000460162 CTSBP07858 339 aa21.9■■□□□ 1.1
PTPN4-207ENST00000460162 TPSB2P20231 275 aa21.9■■□□□ 1.1
PTPN4-207ENST00000460162 GCGRP47871 477 aa21.9■■□□□ 1.1
PTPN4-207ENST00000460162 CDK16Q00536 496 aa21.9■■□□□ 1.1
PTPN4-207ENST00000460162 SRSF1Q07955 248 aaKnown RBP eCLIP21.9■■□□□ 1.1
PTPN4-207ENST00000460162 TPSAB1Q15661 275 aa21.9■■□□□ 1.1
PTPN4-207ENST00000460162 GALNT11Q8NCW6 608 aa21.9■■□□□ 1.1
PTPN4-207ENST00000460162 TRIM58Q8NG06 486 aa21.9■■□□□ 1.1
PTPN4-207ENST00000460162 DENND1AQ8TEH3 1009 aa21.9■■□□□ 1.1
PTPN4-207ENST00000460162 COL26A1Q96A83 441 aa21.9■■□□□ 1.1
PTPN4-207ENST00000460162 FER1L6-AS2Q96M78 137 aa21.9■■□□□ 1.1
PTPN4-207ENST00000460162 IL17FQ96PD4 163 aa21.9■■□□□ 1.1
PTPN4-207ENST00000460162 SMAD5Q99717 465 aaKnown RBP21.9■■□□□ 1.1
PTPN4-207ENST00000460162 LZTFL1Q9NQ48 299 aa21.9■■□□□ 1.1
PTPN4-207ENST00000460162 SLC39A10Q9ULF5 831 aa21.9■■□□□ 1.1
PTPN4-207ENST00000460162 CCDC88CQ9P219 2028 aa21.89■■□□□ 1.1
PTPN4-207ENST00000460162 CYSRT1A8MQ03 144 aa21.89■■□□□ 1.09
PTPN4-207ENST00000460162 VPS4BO75351 444 aa21.89■■□□□ 1.09
PTPN4-207ENST00000460162 NDUFS3O75489 264 aa21.89■■□□□ 1.09
PTPN4-207ENST00000460162 NMBRP28336 390 aa21.89■■□□□ 1.09
PTPN4-207ENST00000460162 NKAIN1Q4KMZ8 207 aa21.89■■□□□ 1.09
PTPN4-207ENST00000460162 RNF187Q5TA31 235 aaPredicted RBP21.89■■□□□ 1.09
PTPN4-207ENST00000460162 MRPL14Q6P1L8 145 aaKnown RBP21.89■■□□□ 1.09
PTPN4-207ENST00000460162 TTC23LQ6PF05 361 aa21.89■■□□□ 1.09
PTPN4-207ENST00000460162 OTOAQ7RTW8 1153 aa21.89■■□□□ 1.09
PTPN4-207ENST00000460162 TAX1BP1Q86VP1 789 aa21.89■■□□□ 1.09
PTPN4-207ENST00000460162 FAM20CQ8IXL6 584 aa21.89■■□□□ 1.09
PTPN4-207ENST00000460162 RAB42Q8N4Z0 105 aa21.89■■□□□ 1.09
PTPN4-207ENST00000460162 RAD51AP1Q96B01 352 aa21.89■■□□□ 1.09
PTPN4-207ENST00000460162 KIFC1Q9BW19 673 aa21.89■■□□□ 1.09
PTPN4-207ENST00000460162 HOMER3Q9NSC5 361 aa21.89■■□□□ 1.09
PTPN4-207ENST00000460162 CAMSAP3Q9P1Y5 1249 aaPredicted RBP21.89■■□□□ 1.09
PTPN4-207ENST00000460162 CIDEBQ9UHD4 219 aa21.89■■□□□ 1.09
PTPN4-207ENST00000460162 VPS4AQ9UN37 437 aa21.89■■□□□ 1.09
PTPN4-207ENST00000460162 RP1L1Q8IWN7 2480 aaPredicted RBP21.88■■□□□ 1.09
PTPN4-207ENST00000460162 SHANK1Q9Y566 2161 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 ANKRD12Q6UB98 2062 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 USP9YO00507 2555 aaPredicted RBP21.88■■□□□ 1.09
PTPN4-207ENST00000460162 A0A1B0GX78 115 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 ARNTP27540 789 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 ARSFP54793 590 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 EIF3BP55884 814 aaKnown RBP21.88■■□□□ 1.09
PTPN4-207ENST00000460162 SLC9A5Q14940 896 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 TYSND1Q2T9J0 566 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 ZC3H12BQ5HYM0 836 aaKnown RBP21.88■■□□□ 1.09
PTPN4-207ENST00000460162 VWA5B1Q5TIE3 1220 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 ARMC3Q5W041 872 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 MRNIPQ6NTE8 343 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 JMJD6Q6NYC1 403 aaPredicted RBP21.88■■□□□ 1.09
PTPN4-207ENST00000460162 LRRC8BQ6P9F7 803 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 OTUD6BQ8N6M0 293 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 CLEC1AQ8NC01 280 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 FKBP10Q96AY3 582 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 ENAMQ9NRM1 1142 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 SYBUQ9NX95 663 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 C5AR2Q9P296 337 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 KLHL20Q9Y2M5 609 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 MAP4K5Q9Y4K4 846 aa21.88■■□□□ 1.09
PTPN4-207ENST00000460162 A6NL46 340 aa21.87■■□□□ 1.09
PTPN4-207ENST00000460162 PEX12O00623 359 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms