RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 LUZP1Q86V48 1076 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 TMEM173Q86WV6 379 aaPredicted RBP4.03□□□□□ -1.76
VPS29-202ENST00000447578 ZNF34Q8IZ26 560 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 NDUFAF2Q8N183 169 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 LMO3Q8TAP4 145 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 ARRDC2Q8TBH0 407 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 APBB2Q92870 758 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 C8orf76Q96K31 380 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 USP28Q96RU2 1077 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 SH3GL2Q99962 352 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 UTP14AQ9BVJ6 771 aaKnown RBP4.03□□□□□ -1.76
VPS29-202ENST00000447578 POLDIP3Q9BY77 421 aaKnown RBP4.03□□□□□ -1.76
VPS29-202ENST00000447578 KCNN2Q9H2S1 579 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 RAD21L1Q9H4I0 556 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 KLHL31Q9H511 634 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 TASP1Q9H6P5 420 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 ACSL5Q9ULC5 683 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 KCNK7Q9Y2U2 307 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 UBR2Q8IWV8 1755 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 EVPLQ92817 2033 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 TOGARAM1Q9Y4F4 1720 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 BCL9O00512 1426 aa4.03□□□□□ -1.76
VPS29-202ENST00000447578 CARMIL3Q8ND23 1372 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 XIRP1Q702N8 1843 aaKnown RBP4.02□□□□□ -1.77
VPS29-202ENST00000447578 MROH5Q6ZUA9 1318 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 ZNF541Q9H0D2 1346 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 SALL1Q9NSC2 1324 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 ABCA3Q99758 1704 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 SHANK3Q9BYB0 1731 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 UQCRHLA0A096LP55 91 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 HTR3EA5X5Y0 456 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 KRTAP9-6A8MVA2 160 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 KDM4EB2RXH2 506 aaPredicted RBP4.02□□□□□ -1.77
VPS29-202ENST00000447578 CTAGE5O15320 804 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 KINO60870 393 aaKnown RBP4.02□□□□□ -1.77
VPS29-202ENST00000447578 IGKV3-20P01619 116 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 GBAP04062 536 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 TPM3P06753 285 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 UQCRHP07919 91 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 THEGLP0DJG4 465 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 CHRNB2P17787 502 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 HLA-DPA1P20036 260 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 CALRP27797 417 aaKnown RBP4.02□□□□□ -1.77
VPS29-202ENST00000447578 COMPP49747 757 aaPredicted RBP4.02□□□□□ -1.77
VPS29-202ENST00000447578 EVCP57679 992 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 TUBB4BP68371 445 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 CSNK2A1P68400 391 aaPredicted RBP4.02□□□□□ -1.77
VPS29-202ENST00000447578 ADORA2A-AS1P86434 159 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 C17orf67Q0P5P2 114 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 MORF4L2Q15014 288 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 STK38Q15208 465 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 MEP1AQ16819 746 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 MYLK3Q32MK0 819 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 C6orf136Q5SQH8 315 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 C9orf50Q5SZB4 431 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 DCST1Q5T197 706 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 ATL3Q6DD88 541 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 NADSYN1Q6IA69 706 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 DUS1LQ6P1R4 473 aaKnown RBP4.02□□□□□ -1.77
VPS29-202ENST00000447578 ALKBH5Q6P6C2 394 aaKnown RBP4.02□□□□□ -1.77
VPS29-202ENST00000447578 PAPD4Q6PIY7 484 aaKnown RBP4.02□□□□□ -1.77
VPS29-202ENST00000447578 B3GNT6Q6ZMB0 384 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 LINC00696Q6ZRV3 163 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 ZBTB49Q6ZSB9 765 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 RBM43Q6ZSC3 357 aaKnown RBP4.02□□□□□ -1.77
VPS29-202ENST00000447578 TPRG1Q6ZUI0 275 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 SHFQ7M4L6 423 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 OTOAQ7RTW8 1153 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 CTU1Q7Z7A3 348 aaKnown RBP4.02□□□□□ -1.77
VPS29-202ENST00000447578 TBC1D10CQ8IV04 446 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 KLHL7Q8IXQ5 586 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 DSELQ8IZU8 1212 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 RASGEF1CQ8N431 466 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 FBXL16Q8N461 479 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 CSNK2A3Q8NEV1 391 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 FIBINQ8TAL6 211 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 PIBF1Q8WXW3 757 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 TRIB2Q92519 343 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 NR4A3Q92570 626 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 KRT35Q92764 455 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 EXOC4Q96A65 974 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 ERLEC1Q96DZ1 483 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 ERO1AQ96HE7 468 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 SEMA3CQ99985 751 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 ABHD6Q9BV23 337 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 MAP6D1Q9H9H5 199 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 SIRT3Q9NTG7 399 aaPredicted RBP4.02□□□□□ -1.77
VPS29-202ENST00000447578 TMEM51Q9NW97 253 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 ARMCX3Q9UH62 379 aaPredicted RBP4.02□□□□□ -1.77
VPS29-202ENST00000447578 LRP6O75581 1613 aa4.02□□□□□ -1.77
VPS29-202ENST00000447578 ZMYM6O95789 1325 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 WDR19Q8NEZ3 1342 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ENO4A6NNW6 628 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 GOLGA6L19H0YKK7 550 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 CCDC188H7C350 402 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 NDUFS4O43181 175 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 ZBTB43O43298 467 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 TSPAN1O60635 241 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 CREG1O75629 220 aa4.01□□□□□ -1.77
VPS29-202ENST00000447578 CAMTA2O94983 1202 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms