RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 HELZP42694 1942 aaKnown RBP9.24□□□□□ -0.93
CUX1-206ENST00000437600 CARNS1A5YM72 827 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 BBIP1A8MTZ0 92 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 PLK4O00444 970 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 AREL1O15033 823 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 ANKRD28O15084 1053 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 PRAMEF4O60810 478 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 H6PDO95479 791 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 OTCP00480 354 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 PDYNP01213 254 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 BMP2P12643 396 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 HSD17B1P14061 328 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 DGKAP23743 735 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 ELK4P28324 431 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 POLR2IP36954 125 aaKnown RBP9.24□□□□□ -0.93
CUX1-206ENST00000437600 ETV3P41162 512 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 RGS4P49798 205 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 CCT8P50990 548 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 ADARP55265 1226 aaKnown RBP9.24□□□□□ -0.93
CUX1-206ENST00000437600 PIGFQ07326 219 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 MERTKQ12866 999 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 ZNF77Q15935 545 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 CRY1Q16526 586 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 MAPKAPK3Q16644 382 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 PTCHD3Q3KNS1 767 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 CCSMST1Q4G0I0 132 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 TMEM259Q4ZIN3 620 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 MPP7Q5T2T1 576 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 PRAMEF9Q5VWM5 478 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 HACD2Q6Y1H2 254 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 STK32CQ86UX6 486 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 CARM1Q86X55 608 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 ZFAND4Q86XD8 727 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 HID1Q8IV36 788 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 SNRNP27Q8WVK2 155 aaKnown RBP9.24□□□□□ -0.93
CUX1-206ENST00000437600 LMLNQ96KR4 655 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 ZNF583Q96ND8 569 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 NRTNQ99748 197 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 P2RY13Q9BPV8 354 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 INPP5KQ9BT40 448 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 ADI1Q9BV57 179 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 OSBPL11Q9BXB4 747 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 RETREG1Q9H6L5 497 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 SLC25A37Q9NYZ2 338 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 LIMD1Q9UGP4 676 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 GNPTGQ9UJJ9 305 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 SLC25A13Q9UJS0 675 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 ZNF510Q9Y2H8 683 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 CCL27Q9Y4X3 112 aa9.24□□□□□ -0.93
CUX1-206ENST00000437600 KIF26AQ9ULI4 1882 aaPredicted RBP9.24□□□□□ -0.93
CUX1-206ENST00000437600 FAM234BA2RU67 622 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 XYLBO75191 536 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 EEDO75530 441 aaKnown RBP9.23□□□□□ -0.93
CUX1-206ENST00000437600 LEFTY1O75610 366 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 STK16O75716 305 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 DIRAS1O95057 198 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 CAPNS1P04632 268 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 EPB42P16452 691 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 EPORP19235 508 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 PBLDP30039 288 aaPredicted RBP9.23□□□□□ -0.93
CUX1-206ENST00000437600 SLC5A2P31639 672 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 SLC6A11P48066 632 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 TRPC1P48995 793 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 ARSIQ5FYB1 569 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 PRSS36Q5K4E3 855 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 FAM180BQ6P0A1 224 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 UBE2R2Q712K3 238 aaPredicted RBP9.23□□□□□ -0.93
CUX1-206ENST00000437600 Q7L0L9 218 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 OR2A12Q8NGT7 310 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 RMND5BQ96G75 393 aaPredicted RBP9.23□□□□□ -0.93
CUX1-206ENST00000437600 OR52E6Q96RD3 313 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 COPS8Q99627 209 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 DPY30Q9C005 99 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 BRINP2Q9C0B6 783 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 ARMC1Q9NVT9 282 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 ANAPC2Q9UJX6 822 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 TCRBV5S2A0A599 114 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.23□□□□□ -0.93
CUX1-206ENST00000437600 CLOCKO15516 846 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 WDR47O94967 919 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 GBAP04062 536 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 NR4A1P22736 598 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 SPAM1P38567 509 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 PREPP48147 710 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 IL1RL1Q01638 556 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 EMX2Q04743 252 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 TMED1Q13445 227 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 PCBP2Q15366 365 aaKnown RBP eCLIP9.23□□□□□ -0.931e-6■■■■■ 33.2
CUX1-206ENST00000437600 DHCR24Q15392 516 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 LCN8Q6JVE9 175 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 NEK5Q6P3R8 708 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 CERS6Q6ZMG9 384 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 AHI1Q8N157 1196 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 STK40Q8N2I9 435 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 C2orf73Q8N5S3 287 aaPredicted RBP9.23□□□□□ -0.93
CUX1-206ENST00000437600 SELENOMQ8WWX9 145 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 ZUFSPQ96AP4 578 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 MRPL38Q96DV4 380 aaKnown RBP9.23□□□□□ -0.93
CUX1-206ENST00000437600 SCRN2Q96FV2 425 aa9.23□□□□□ -0.93
CUX1-206ENST00000437600 APIPQ96GX9 242 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms