RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 C2orf15Q8WU43 125 aaKnown RBP15.1■□□□□ 0.01
PTPRF-206ENST00000429895 UFD1Q92890 307 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 SYT17Q9BSW7 474 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 RIMKLBQ9ULI2 386 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 DCCP43146 1447 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 APOC1P02654 83 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 ARF3P61204 181 aaPredicted RBP15.1■□□□□ 0.01
PTPRF-206ENST00000429895 ARF1P84077 181 aaKnown RBP15.1■□□□□ 0.01
PTPRF-206ENST00000429895 TMEM214Q6NUQ4 689 aaKnown RBP15.1■□□□□ 0.01
PTPRF-206ENST00000429895 SLC29A4Q7RTT9 530 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 NXPE1Q8N323 547 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 C1orf216Q8TAB5 229 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 SP140LQ9H930 580 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 KLRF1Q9NZS2 232 aa15.1■□□□□ 0.01
PTPRF-206ENST00000429895 PRAMEF33A0A0G2JMD5 474 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 FAM237AA0A1B0GTK4 181 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 CDC7O00311 574 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 PRAMEF10O60809 474 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 BDKRB1P46663 353 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 CRISP3P54108 245 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 ZMYND11Q15326 602 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 ZFP69Q49AA0 526 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 GPR153Q6NV75 609 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 CHRDL2Q6WN34 429 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 MSANTD1Q6ZTZ1 278 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 MSL3Q8N5Y2 521 aaKnown RBP15.09■□□□□ 0.01
PTPRF-206ENST00000429895 SIPA1Q96FS4 1042 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 RAB11FIP5Q9BXF6 653 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 MUC13Q9H3R2 512 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 ZNF282Q9UDV7 671 aaPredicted RBP15.09■□□□□ 0.01
PTPRF-206ENST00000429895 RPL10P27635 214 aaKnown RBP15.09■□□□□ 0.01
PTPRF-206ENST00000429895 GDF10P55107 478 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 APOBEC3GQ9HC16 384 aaKnown RBP15.09■□□□□ 0.01
PTPRF-206ENST00000429895 C2CD4BA6NLJ0 364 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 AP1S2P56377 157 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 CEP97Q8IW35 865 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 C4orf32Q8N8J7 132 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 SUV39H2Q9H5I1 410 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 DHX33Q9H6R0 707 aaKnown RBP15.09■□□□□ 0.01
PTPRF-206ENST00000429895 SLC17A6Q9P2U8 582 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 RNF225M0QZC1 329 aaPredicted RBP15.09■□□□□ 0.01
PTPRF-206ENST00000429895 CD2P06729 351 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 MAP3K8P41279 467 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 OR3A3P47888 321 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 OR3A2P47893 321 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 CLCN4P51793 760 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 CRHR2Q13324 411 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 PDGFRLQ15198 375 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 FAM182AQ5T1J6 154 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 BORCS5Q969J3 196 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 ARHGAP9Q9BRR9 750 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 C12orf4Q9NQ89 552 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 FARSBQ9NSD9 589 aaKnown RBP15.09■□□□□ 0.01
PTPRF-206ENST00000429895 EIF1AYO14602 144 aaKnown RBP15.09■□□□□ 0.01
PTPRF-206ENST00000429895 CCNOP22674 350 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 SLC10A6Q3KNW5 377 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 SPERTQ8NA61 448 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 WFIKKN2Q8TEU8 576 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 SLC39A3Q9BRY0 314 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 ATXN10Q9UBB4 475 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 UPB1Q9UBR1 384 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 ZNF221Q9UK13 617 aa15.09■□□□□ 0.01
PTPRF-206ENST00000429895 WASHC1A8K0Z3 465 aa15.08■□□□□ 0.01
PTPRF-206ENST00000429895 WASH3PC4AMC7 463 aa15.08■□□□□ 0.01
PTPRF-206ENST00000429895 FMO3P31513 532 aa15.08■□□□□ 0.01
PTPRF-206ENST00000429895 EIF2S3P41091 472 aaKnown RBP15.08■□□□□ 0.01
PTPRF-206ENST00000429895 CLCNKAP51800 687 aa15.08■□□□□ 0.01
PTPRF-206ENST00000429895 RALGPS1Q5JS13 557 aa15.08■□□□□ 0.01
PTPRF-206ENST00000429895 WASH2PQ6VEQ5 465 aa15.08■□□□□ 0.01
PTPRF-206ENST00000429895 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.08■□□□□ 0.011e-11■■□□□ 13.6
PTPRF-206ENST00000429895 SLC13A3Q8WWT9 602 aa15.08■□□□□ 0.01
PTPRF-206ENST00000429895 SNTG1Q9NSN8 517 aa15.08■□□□□ 0.01
PTPRF-206ENST00000429895 ZNF639Q9UID6 485 aa15.08■□□□□ 0.01
PTPRF-206ENST00000429895 PLAGL1Q9UM63 463 aa15.08■□□□□ 0.01
PTPRF-206ENST00000429895 ERI3O43414 337 aaKnown RBP15.08■□□□□ 0
PTPRF-206ENST00000429895 RPP14O95059 124 aaKnown RBP15.08■□□□□ 0
PTPRF-206ENST00000429895 AP2S1P53680 142 aaPredicted RBP15.08■□□□□ 0
PTPRF-206ENST00000429895 HNRNPDQ14103 355 aaKnown RBP15.08■□□□□ 0
PTPRF-206ENST00000429895 EGFLAMQ63HQ2 1017 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 OR2L8Q8NGY9 312 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 POF1BQ8WVV4 589 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 C7orf26Q96N11 449 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 GORASP1Q9BQQ3 440 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 NIPSNAP2O75323 286 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 ASPAP45381 313 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 XIAPP98170 497 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 ENPP2Q13822 863 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 CRELD2Q6UXH1 353 aaPredicted RBP15.08■□□□□ 0
PTPRF-206ENST00000429895 DLK2Q6UY11 383 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 CNTD1Q8N815 330 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 ZNF527Q8NB42 609 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 FAM13CQ8NE31 585 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 RIT1Q92963 219 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 NDC1Q9BTX1 674 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 UNC93B1Q9H1C4 597 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 CCSER2Q9H7U1 834 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 PPM1HQ9ULR3 514 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 CORO1CQ9ULV4 474 aaPredicted RBP15.08■□□□□ 0
PTPRF-206ENST00000429895 C5orf51A6NDU8 294 aa15.08■□□□□ 0
PTPRF-206ENST00000429895 AKAP8O43823 692 aaKnown RBP15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms