RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 PLXNA4Q9HCM2 1894 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 SDR39U1Q9NRG7 319 aaPredicted RBP8.17□□□□□ -1.1
USP54-203ENST00000418501 PRPS1L1P21108 318 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 PPM1FP49593 454 aaPredicted RBP8.17□□□□□ -1.1
USP54-203ENST00000418501 AGTR2P50052 363 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 MAPKAPK3Q16644 382 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 C6orf136Q5SQH8 315 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 PRAMEF14Q5SWL7 426 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 PIP5KL1Q5T9C9 394 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 PRAMEF13Q5VWM6 474 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 CYHR1Q6ZMK1 362 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 DHFR2Q86XF0 187 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 L3MBTL4Q8NA19 623 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 HLA-CQ95604 372 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 CCDC124Q96CT7 223 aaKnown RBP8.17□□□□□ -1.1
USP54-203ENST00000418501 NSMCE3Q96MG7 304 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 LRRC3BQ96PB8 259 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 C1QTNF2Q9BXJ5 285 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 HEBP1Q9NRV9 189 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 GIMAP4Q9NUV9 329 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 C6orf203Q9P0P8 240 aaPredicted RBP8.17□□□□□ -1.1
USP54-203ENST00000418501 ATXN10Q9UBB4 475 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 PCDHGA2Q9Y5H1 932 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 MTCH2Q9Y6C9 303 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 ATP6AP2A0A1C7CYW4 349 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 URADA6NGE7 173 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 TMEM233B4DJY2 109 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 STK25O00506 426 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 PLRG1O43660 514 aaKnown RBP8.17□□□□□ -1.1
USP54-203ENST00000418501 ATP6AP2O75787 350 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 SRFP11831 508 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 ITGAXP20702 1163 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 HNRNPA2B1P22626 353 aaKnown RBP8.17□□□□□ -1.1
USP54-203ENST00000418501 ITPKAP23677 461 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 PSMA4P25789 261 aaKnown RBP8.17□□□□□ -1.1
USP54-203ENST00000418501 CMPK1P30085 196 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 EEFSECP57772 596 aaKnown RBP8.17□□□□□ -1.1
USP54-203ENST00000418501 SKP1P63208 163 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 TUBB3Q13509 450 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 ENPP2Q13822 863 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 RCN1Q15293 331 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 LCTLQ6UWM7 567 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 NELL1Q92832 810 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 FGF14Q92915 247 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 GSDMCQ9BYG8 508 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 UBE2ZQ9H832 354 aaPredicted RBP8.17□□□□□ -1.1
USP54-203ENST00000418501 CLEC1BQ9P126 229 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 VPS29Q9UBQ0 182 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 SUCOQ9UBS9 1254 aaKnown RBP8.17□□□□□ -1.1
USP54-203ENST00000418501 COQ6Q9Y2Z9 468 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 HS3ST3A1Q9Y663 406 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 ANAPC1Q9H1A4 1944 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 MEI4A8MW99 385 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 TNFRSF10CO14798 259 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 FFAR3O14843 346 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 GPR42O15529 346 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 TNFP01375 233 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 ACADSP16219 412 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 GMPRP36959 345 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 RABIFP47224 123 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 CCR8P51685 355 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 ACTR3P61158 418 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 GBX1Q14549 363 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 PHKG1Q16816 387 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 TMEM196Q5HYL7 178 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 CYP20A1Q6UW02 462 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 GK5Q6ZS86 529 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 GPR180Q86V85 440 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 TMEM126BQ8IUX1 230 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 PELI3Q8N2H9 469 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 MAPK15Q8TD08 544 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 SLC5A11Q8WWX8 675 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 SLC30A3Q99726 388 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 KCTD14Q9BQ13 255 aaPredicted RBP8.17□□□□□ -1.1
USP54-203ENST00000418501 NLNQ9BYT8 704 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 ASPSCR1Q9BZE9 553 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 ROGDIQ9GZN7 287 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 SLC2A4RGQ9NR83 387 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 STOX2Q9P2F5 926 aaPredicted RBP8.17□□□□□ -1.1
USP54-203ENST00000418501 STX18Q9P2W9 335 aaKnown RBP8.17□□□□□ -1.1
USP54-203ENST00000418501 MMP17Q9ULZ9 603 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 ITM2BQ9Y287 266 aa8.17□□□□□ -1.1
USP54-203ENST00000418501 SERTM1A2A2V5 107 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 FADS2P1A8MWK0 482 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 ERN1O75460 977 aaKnown RBP8.16□□□□□ -1.1
USP54-203ENST00000418501 UMPSP11172 480 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 PTX3P26022 381 aaPredicted RBP8.16□□□□□ -1.1
USP54-203ENST00000418501 ERVPABLB-1P60509 514 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 KPNB1Q14974 876 aaKnown RBP8.16□□□□□ -1.1
USP54-203ENST00000418501 RBBP5Q15291 538 aaKnown RBP8.16□□□□□ -1.1
USP54-203ENST00000418501 PPP1R3AQ16821 1122 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 RIPOR1Q6ZS17 1223 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 ADCK2Q7Z695 626 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 TRIM69Q86WT6 500 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 PHTF2Q8N3S3 785 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 CHFRQ96EP1 664 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 NSUN5Q96P11 429 aaKnown RBP8.16□□□□□ -1.1
USP54-203ENST00000418501 ATG10Q9H0Y0 220 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 PCED1AQ9H1Q7 454 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 TRIM45Q9H8W5 580 aaPredicted RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms