RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 DYTNA2CJ06 578 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 PTGES3LE9PB15 166 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 HS6ST1O60243 411 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 PGLSO95336 258 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 RETP07949 1114 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 RPS3P23396 243 aaKnown RBP eCLIP9.62□□□□□ -0.87
SS18-203ENST00000415083 HNF1BP35680 557 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 SPIDRQ14159 915 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 NEK5Q6P3R8 708 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 CRTC3Q6UUV7 619 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 GPR26Q8NDV2 337 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 APOL5Q9BWW9 433 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 TM6SF2Q9BZW4 377 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 TBC1D23Q9NUY8 699 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 INTS6Q9UL03 887 aaKnown RBP9.62□□□□□ -0.87
SS18-203ENST00000415083 PCDHGB1Q9Y5G3 927 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 CPQQ9Y646 472 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 DOCK6Q96HP0 2047 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 A0A1B0GVM2 712 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 GOLGA8CPA6NN73 597 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 FAM220BPB1ANY3 271 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 H0Y626 953 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 M0QX08 132 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 TRIM16O95361 564 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 BCL10O95999 233 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 GALTP07902 379 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 ADRA2AP08913 450 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 OCM2P0CE71 109 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 OCMP0CE72 109 aaPredicted RBP9.62□□□□□ -0.87
SS18-203ENST00000415083 CYP4B1P13584 511 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 ACRV1P26436 265 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 TGFBR2P37173 567 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 SLC35A2P78381 396 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 VLDLRP98155 873 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 TWF1Q12792 350 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 ITGADQ13349 1161 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 OXA1LQ15070 435 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 CHRNA6Q15825 494 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 ADGRF1Q5T601 910 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 TMEM236Q5W0B7 351 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 CHST9Q7L1S5 443 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 ADAMTSL2Q86TH1 951 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 PTOV1Q86YD1 416 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 ZCCHC7Q8N3Z6 543 aaKnown RBP9.62□□□□□ -0.87
SS18-203ENST00000415083 RPL3LQ92901 407 aaKnown RBP9.62□□□□□ -0.87
SS18-203ENST00000415083 RDH12Q96NR8 316 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 OR52E6Q96RD3 313 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 ZNF300Q96RE9 604 aaPredicted RBP9.62□□□□□ -0.87
SS18-203ENST00000415083 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.62□□□□□ -0.87
SS18-203ENST00000415083 ING2Q9H160 280 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 RRAGCQ9HB90 399 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 LRTM1Q9HBL6 345 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 MAGEE1Q9HCI5 957 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.62□□□□□ -0.87
SS18-203ENST00000415083 GNPTGQ9UJJ9 305 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 BTBD3Q9Y2F9 522 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 AGAP14A8MT82 685 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 IFRD1O00458 451 aaPredicted RBP9.62□□□□□ -0.87
SS18-203ENST00000415083 WBP4O75554 376 aaKnown RBP9.62□□□□□ -0.87
SS18-203ENST00000415083 GABARAPO95166 117 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 ZNF12P17014 697 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 SDC1P18827 310 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 CD22P20273 847 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 CCR7P32248 378 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 RYKP34925 604 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 HPCAL1P37235 193 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 ARL1P40616 181 aaPredicted RBP9.62□□□□□ -0.87
SS18-203ENST00000415083 CSKP41240 450 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 ACLYP53396 1101 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 PRSS36Q5K4E3 855 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 EGFLAMQ63HQ2 1017 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 ADNP2Q6IQ32 1131 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 VTCN1Q7Z7D3 282 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 OR5K1Q8NHB7 308 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 BHMTQ93088 406 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 PPP3R2Q96LZ3 170 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 UGT2B28Q9BY64 529 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 TRIT1Q9H3H1 467 aaKnown RBP9.62□□□□□ -0.87
SS18-203ENST00000415083 DUSP21Q9H596 190 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 TRNAU1APQ9NX07 287 aaKnown RBP9.62□□□□□ -0.87
SS18-203ENST00000415083 STOML2Q9UJZ1 356 aa9.62□□□□□ -0.87
SS18-203ENST00000415083 KRBA1A5PL33 1030 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 PER2O15055 1255 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 SEC22BO75396 215 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 GCM2O75603 506 aaPredicted RBP9.61□□□□□ -0.87
SS18-203ENST00000415083 FTH1P02794 183 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 BMP4P12644 408 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 MSH3P20585 1137 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 KDM4DQ6B0I6 523 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 FRA10AC1Q70Z53 315 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 FBXO22Q8NEZ5 403 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 RBM4BQ9BQ04 359 aaKnown RBP9.61□□□□□ -0.87
SS18-203ENST00000415083 RBM4Q9BWF3 364 aaKnown RBP9.61□□□□□ -0.87
SS18-203ENST00000415083 ADGRE3Q9BY15 652 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 GABARAPL1Q9H0R8 117 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 ATP13A3Q9H7F0 1226 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 PCDHGA4Q9Y5G9 962 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 COMMD10Q9Y6G5 202 aa9.61□□□□□ -0.87
SS18-203ENST00000415083 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.61□□□□□ -0.87
SS18-203ENST00000415083 NPIPB15A6NHN6 443 aaPredicted RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms