RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 KRT75O95678 551 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 AQP1P29972 269 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 ADRA1AP35348 466 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 BUD31P41223 144 aaPredicted RBP8.87□□□□□ -0.99
LIG4-202ENST00000405925 STXBP1P61764 594 aaKnown RBP8.87□□□□□ -0.99
LIG4-202ENST00000405925 ERVK-8P63133 956 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 STX4Q12846 297 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 SP140Q13342 867 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 PWP1Q13610 501 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 FGD3Q5JSP0 725 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 TMEM31Q5JXX7 168 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 KIAA1161Q6NSJ0 714 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 FRMD7Q6ZUT3 714 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 OR4A15Q8NGL6 344 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 PIH1D2Q8WWB5 315 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 FOXJ1Q92949 421 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 NELL2Q99435 816 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 BDH2Q9BUT1 245 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 DDX18Q9NVP1 670 aaKnown RBP8.87□□□□□ -0.99
LIG4-202ENST00000405925 THEGQ9P2T0 379 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 VPS29Q9UBQ0 182 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 ANAPC2Q9UJX6 822 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 RNF11Q9Y3C5 154 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 BBIP1A8MTZ0 92 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 PCDH7O60245 1069 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 NUDT14O95848 222 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 RRM2P31350 389 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 CSNK1DP48730 415 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 ELF3P78545 371 aaPredicted RBP8.87□□□□□ -0.99
LIG4-202ENST00000405925 FOXM1Q08050 763 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 BNIP1Q12981 228 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 TDGQ13569 410 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 ZNHIT3Q15649 155 aaPredicted RBP8.87□□□□□ -0.99
LIG4-202ENST00000405925 NDUFA9Q16795 377 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 IZUMO2Q6UXV1 221 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 TMIGD1Q6UXZ0 262 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 OR2T12Q8NG77 320 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 RHEBL1Q8TAI7 183 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 CD244Q9BZW8 370 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 UBE2ZQ9H832 354 aaPredicted RBP8.87□□□□□ -0.99
LIG4-202ENST00000405925 INTS6Q9UL03 887 aaKnown RBP8.87□□□□□ -0.99
LIG4-202ENST00000405925 PRPF19Q9UMS4 504 aaKnown RBP8.87□□□□□ -0.99
LIG4-202ENST00000405925 BRWD1Q9NSI6 2320 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 MEF2AQ02078 507 aaPredicted RBP8.87□□□□□ -0.99
LIG4-202ENST00000405925 HEPACAMQ14CZ8 416 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 GPAT3Q53EU6 434 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 ZFP1Q6P2D0 407 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 RFLNAQ6ZTI6 216 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 DPPA4Q7L190 304 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 C1orf52Q8N6N3 182 aaKnown RBP8.87□□□□□ -0.99
LIG4-202ENST00000405925 BRINP2Q9C0B6 783 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 SEMA6AQ9H2E6 1030 aa8.87□□□□□ -0.99
LIG4-202ENST00000405925 APOBEC3BQ9UH17 382 aaKnown RBP8.87□□□□□ -0.99
LIG4-202ENST00000405925 TET1Q8NFU7 2136 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 DYTNA2CJ06 578 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 GSC2O15499 205 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 ERI3O43414 337 aaKnown RBP8.86□□□□□ -0.99
LIG4-202ENST00000405925 JUNDP17535 347 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 HNRNPA2B1P22626 353 aaKnown RBP8.86□□□□□ -0.99
LIG4-202ENST00000405925 RAD23AP54725 363 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 CLDN2P57739 230 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 SLC34A1Q06495 639 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 KLC1Q07866 573 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 OR4D1Q15615 310 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 SLC44A4Q53GD3 710 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 IRAK1BP1Q5VVH5 260 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 DENND5AQ6IQ26 1287 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 BHLHA9Q7RTU4 235 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 SPRED2Q7Z698 418 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 HPS6Q86YV9 775 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 SIX5Q8N196 739 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 JPH3Q8WXH2 748 aaPredicted RBP8.86□□□□□ -0.99
LIG4-202ENST00000405925 NXPE3Q969Y0 559 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 DTD2Q96FN9 168 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 OR51B5Q9H339 312 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 ARMC7Q9H6L4 198 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 FBRSL1Q9HCM7 1045 aaKnown RBP8.86□□□□□ -0.99
LIG4-202ENST00000405925 RPS6KB2Q9UBS0 482 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 SCML1Q9UN30 329 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 ZDBF2Q9HCK1 2354 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 KRT36O76013 467 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 UBTFL6P0CB48 400 aaPredicted RBP8.86□□□□□ -0.99
LIG4-202ENST00000405925 THEGLP0DJG4 465 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 CDH1P12830 882 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 POLR2CP19387 275 aaPredicted RBP8.86□□□□□ -0.99
LIG4-202ENST00000405925 CALRP27797 417 aaKnown RBP8.86□□□□□ -0.99
LIG4-202ENST00000405925 GSSP48637 474 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 ISCA2Q86U28 154 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 PLD3Q8IV08 490 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 DEFB123Q8N688 67 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 TMIEQ8NEW7 156 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 XAGE5Q8WWM1 108 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 SLC5A11Q8WWX8 675 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 CNBD2Q96M20 576 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 HOPXQ9BPY8 73 aaPredicted RBP8.86□□□□□ -0.99
LIG4-202ENST00000405925 ARHGEF3Q9NR81 526 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 OBP2AQ9NY56 170 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 H7BY64 318 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 PSMD11O00231 422 aa8.86□□□□□ -0.99
LIG4-202ENST00000405925 MATN2O00339 956 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms