RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 PPM1FP49593 454 aaPredicted RBP13.81□□□□□ -0.2
SKA1-202ENST00000398452 BST1Q10588 318 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 RCN2Q14257 317 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 CLCA4Q14CN2 919 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 PCBP2Q15366 365 aaKnown RBP eCLIP13.81□□□□□ -0.2
SKA1-202ENST00000398452 CCDC6Q16204 474 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 RBBP7Q16576 425 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 TRIM61Q5EBN2 209 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 ZNF678Q5SXM1 525 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 THEMIS2Q5TEJ8 643 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 PEAR1Q5VY43 1037 aaPredicted RBP13.81□□□□□ -0.2
SKA1-202ENST00000398452 LAIR1Q6GTX8 287 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 CAPN13Q6MZZ7 669 aaPredicted RBP13.81□□□□□ -0.2
SKA1-202ENST00000398452 AGTRAPQ6RW13 159 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 FAM47EQ6ZV65 393 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 LRRC70Q7Z2Q7 622 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 HOMEZQ8IX15 550 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 RBM12BQ8IXT5 1001 aaKnown RBP13.81□□□□□ -0.2
SKA1-202ENST00000398452 SNX31Q8N9S9 440 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 ZNF548Q8NEK5 533 aaPredicted RBP13.81□□□□□ -0.2
SKA1-202ENST00000398452 DLG3Q92796 817 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 RHBDF1Q96CC6 855 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 MED8Q96G25 268 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 TMEM237Q96Q45 408 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 PITPNM3Q9BZ71 974 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 CD244Q9BZW8 370 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 TMEM74BQ9NUR3 256 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 POT1Q9NUX5 634 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 KLF15Q9UIH9 416 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 PTBP2Q9UKA9 531 aaKnown RBP13.81□□□□□ -0.2
SKA1-202ENST00000398452 CDV3Q9UKY7 258 aaKnown RBP13.81□□□□□ -0.2
SKA1-202ENST00000398452 PNMA8BQ9ULN7 279 aaPredicted RBP13.81□□□□□ -0.2
SKA1-202ENST00000398452 EML5Q05BV3 1969 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 NCOR2Q9Y618 2525 aa13.81□□□□□ -0.2
SKA1-202ENST00000398452 TRBV23OR9-2A0A075B6M9 112 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 DCDC2BA2VCK2 349 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 OR52A4PA6NMU1 304 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 K7EPI3 171 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 MYO1CO00159 1063 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 SDC3O75056 442 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 PIAS2O75928 621 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 WDR47O94967 919 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 EPN2O95208 641 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 TROVE2P10155 538 aaKnown RBP eCLIP13.8□□□□□ -0.2
SKA1-202ENST00000398452 EPB42P16452 691 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 PNLIPRP1P54315 467 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 PRKAA1Q13131 559 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 NAE1Q13564 534 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 ARHGAP19Q14CB8 494 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.8□□□□□ -0.2
SKA1-202ENST00000398452 PRAMEF14Q5SWL7 426 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 DUS1LQ6P1R4 473 aaKnown RBP13.8□□□□□ -0.2
SKA1-202ENST00000398452 NRROSQ86YC3 692 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 UBTD2Q8WUN7 234 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 ZFPM2Q8WW38 1151 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 CAMK1GQ96NX5 476 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 DRC3Q9H069 523 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 FAM107BQ9H098 131 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 ILKAPQ9H0C8 392 aaPredicted RBP13.8□□□□□ -0.2
SKA1-202ENST00000398452 ATG10Q9H0Y0 220 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 SLC32A1Q9H598 525 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 CCDC177Q9NQR7 707 aaPredicted RBP13.8□□□□□ -0.2
SKA1-202ENST00000398452 ABCF3Q9NUQ8 709 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 DNAJC11Q9NVH1 559 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 STOX2Q9P2F5 926 aaPredicted RBP13.8□□□□□ -0.2
SKA1-202ENST00000398452 DYRK1BQ9Y463 629 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 CSNK1G3Q9Y6M4 447 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 DCHS1Q96JQ0 3298 aa13.8□□□□□ -0.2
SKA1-202ENST00000398452 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.79□□□□□ -0.2
SKA1-202ENST00000398452 PRR19A6NJB7 356 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 SRRM3A6NNA2 597 aaPredicted RBP13.79□□□□□ -0.2
SKA1-202ENST00000398452 LMO7DNF2Z398 122 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 CLGNO14967 610 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 KHNYNO15037 678 aaKnown RBP13.79□□□□□ -0.2
SKA1-202ENST00000398452 SIX3O95343 332 aaPredicted RBP13.79□□□□□ -0.2
SKA1-202ENST00000398452 SLC16A8O95907 504 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 RETP07949 1114 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 XRCC1P18887 633 aaPredicted RBP13.79□□□□□ -0.2
SKA1-202ENST00000398452 TGM1P22735 817 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 SHMT2P34897 504 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 MPLP40238 635 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 RXRGP48443 463 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 CCT8P50990 548 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 RAB28P51157 221 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 CCNG1P51959 295 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 CLCQ05315 142 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 GRIK2Q13002 908 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 GTF2H2Q13888 395 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 UNC50Q53HI1 259 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 FBXO48Q5FWF7 155 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 GTF2H2CQ6P1K8 395 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 IYDQ6PHW0 289 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 SLC23A3Q6PIS1 610 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 MBOAT1Q6ZNC8 495 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 WDR75Q8IWA0 830 aaKnown RBP13.79□□□□□ -0.2
SKA1-202ENST00000398452 TEX9Q8N6V9 391 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 TRPC4APQ8TEL6 797 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 LCN9Q8WX39 176 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 SMPDL3AQ92484 453 aa13.79□□□□□ -0.2
SKA1-202ENST00000398452 GRAMD1AQ96CP6 724 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms