RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 TTC23LQ6PF05 361 aa20.9■□□□□ 0.94
CCDC28B-201ENST00000373602 CCDC137Q6PK04 289 aaKnown RBP20.9■□□□□ 0.94
CCDC28B-201ENST00000373602 C2orf73Q8N5S3 287 aaPredicted RBP20.9■□□□□ 0.94
CCDC28B-201ENST00000373602 LMNTD1Q8N9Z9 388 aa20.9■□□□□ 0.94
CCDC28B-201ENST00000373602 RAD51AP1Q96B01 352 aa20.9■□□□□ 0.94
CCDC28B-201ENST00000373602 RAB11FIP5Q9BXF6 653 aa20.9■□□□□ 0.94
CCDC28B-201ENST00000373602 SLC39A10Q9ULF5 831 aa20.9■□□□□ 0.94
CCDC28B-201ENST00000373602 PLCL2Q9UPR0 1127 aa20.9■□□□□ 0.94
CCDC28B-201ENST00000373602 MRFAP1Q9Y605 127 aa20.9■□□□□ 0.94
CCDC28B-201ENST00000373602 NFS1Q9Y697 457 aa20.9■□□□□ 0.94
CCDC28B-201ENST00000373602 SNRNP200O75643 2136 aaKnown RBP20.9■□□□□ 0.94
CCDC28B-201ENST00000373602 FAM237BA0A1B0GVD1 139 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 MAGEB16A2A368 324 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 C9J4A7 227 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 H3BMM5 538 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 PGRMC1O00264 195 aaKnown RBP20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 ZSCAN9O15535 394 aaPredicted RBP20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 C1orf105O95561 183 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 ESR1P03372 595 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 CTSBP07858 339 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 CBSLP0DN79 551 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 CBSP35520 551 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 KLRB1Q12918 225 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 GBX1Q14549 363 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 FAM69BQ5VUD6 431 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 CPZQ66K79 652 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 NEPROQ6NW34 567 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 CASC4Q6P4E1 433 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 TLDC1Q6P9B6 456 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 COG1Q8WTW3 980 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 TRIM56Q9BRZ2 755 aaKnown RBP20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 DHRS4Q9BTZ2 278 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 XAB2Q9HCS7 855 aaKnown RBP20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 KLHL20Q9Y2M5 609 aa20.89■□□□□ 0.93
CCDC28B-201ENST00000373602 ARGFXA6NJG6 315 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 SDR42E2A6NKP2 422 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 PRICKLE3O43900 615 aaPredicted RBP20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 NIPSNAP2O75323 286 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 PTGIRP43119 386 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 BDKRB1P46663 353 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 ANKRD20A4Q4UJ75 823 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 ASB18Q6ZVZ8 466 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 CENPUQ71F23 418 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 TAX1BP1Q86VP1 789 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 CILP2Q8IUL8 1156 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 SLC35F6Q8N357 371 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 ZNF655Q8N720 491 aaPredicted RBP20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 PROKR1Q8TCW9 393 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 ACTRT1Q8TDG2 376 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 SKA2Q8WVK7 121 aaPredicted RBP20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 FOPNLQ96NB1 174 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 SERPINB12Q96P63 405 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 GBP5Q96PP8 586 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 OSBPL9Q96SU4 736 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 ING2Q9H160 280 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 GRPEL1Q9HAV7 217 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 EURLQ9NYK6 297 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 SAMD15Q9P1V8 674 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 SRPK3Q9UPE1 567 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 RUVBL2Q9Y230 463 aaKnown RBP20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 CRYL1Q9Y2S2 319 aa20.88■□□□□ 0.93
CCDC28B-201ENST00000373602 PHF2O75151 1096 aa20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 FKBP9O95302 570 aa20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 ATP5DP30049 168 aa20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 CCNFP41002 786 aa20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 CHAF1BQ13112 559 aa20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 DHX34Q14147 1143 aaKnown RBP20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 SF1Q15637 639 aaKnown RBP20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 CCSMST1Q4G0I0 132 aa20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 C1orf189Q5VU69 101 aa20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 MCATQ8IVS2 390 aaKnown RBP20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 HMGCLL1Q8TB92 370 aa20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 ZNF669Q96BR6 464 aaPredicted RBP20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 C17orf62Q9BQA9 187 aa20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 ACSS2Q9NR19 701 aa20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 INTS7Q9NVH2 962 aaKnown RBP20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 INTS10Q9NVR2 710 aaKnown RBP20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 VPS9D1Q9Y2B5 631 aa20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 PADI2Q9Y2J8 665 aa20.87■□□□□ 0.93
CCDC28B-201ENST00000373602 FER1L5A0AVI2 2057 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 GOLGA8MH3BSY2 632 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 ZSCAN12O43309 604 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 KLF7O75840 302 aaPredicted RBP20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 MATN4O95460 622 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 PDGFAP04085 211 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 PKMP14618 531 aaKnown RBP20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 CHRM3P20309 590 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 MAGEA3P43357 314 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 GCGRP47871 477 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 FNTAP49354 379 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 DCDP81605 110 aaKnown RBP20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 FCRL6Q6DN72 434 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 CNSTQ6PJW8 725 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 FIGLAQ6QHK4 219 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 RAB42Q8N4Z0 105 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 ZBTB2Q8N680 514 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 MAGEC3Q8TD91 643 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 FAM136AQ96C01 138 aa20.86■□□□□ 0.93
CCDC28B-201ENST00000373602 IRAK4Q9NWZ3 460 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms