RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 MED8Q96G25 268 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 EFCAB1Q9HAE3 211 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 MRPL40Q9NQ50 206 aaKnown RBP13.39□□□□□ -0.27
PTPRF-202ENST00000372405 PFDN4Q9NQP4 134 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 C2orf42Q9NWW7 574 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 PSMD13Q9UNM6 376 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 SLC17A4Q9Y2C5 497 aa13.39□□□□□ -0.27
PTPRF-202ENST00000372405 POM121BA6NF01 834 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 GPR89AB7ZAQ6 455 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 E7EQ34 232 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 KMOO15229 486 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 GPR89BP0CG08 455 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 ACADMP11310 421 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 EZRP15311 586 aaKnown RBP13.38□□□□□ -0.27
PTPRF-202ENST00000372405 CAPN3P20807 821 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 CCR3P51677 355 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 NEK2P51955 445 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 UFM1P61960 85 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 EMX2Q04743 252 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 CHIT1Q13231 466 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 MAPRE2Q15555 327 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 SNCBQ16143 134 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 AP5B1Q2VPB7 878 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 LRRC56Q8IYG6 542 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-202ENST00000372405 RGL4Q8IZJ4 473 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 PHC3Q8NDX5 983 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 FLCNQ8NFG4 579 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 OR5AR1Q8NGP9 310 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 MTFMTQ96DP5 389 aaKnown RBP13.38□□□□□ -0.27
PTPRF-202ENST00000372405 MSANTD3Q96H12 275 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 NRTNQ99748 197 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 APOOQ9BUR5 198 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 SLC25A23Q9BV35 468 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 ACPTQ9BZG2 426 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 ACTL8Q9H568 366 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 PACSIN3Q9UKS6 424 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 NCKAP1Q9Y2A7 1128 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 CA5BQ9Y2D0 317 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 DNMT3AQ9Y6K1 912 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-202ENST00000372405 DNAH14Q0VDD8 3507 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 C10orf142B7Z368 130 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 NR5A2O00482 541 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 LATO43561 262 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 NRP2O60462 931 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 CHRNB1P11230 501 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 IL9P15248 144 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 RPL10P27635 214 aaKnown RBP13.38□□□□□ -0.27
PTPRF-202ENST00000372405 IL12AP29459 219 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 CLDN2P57739 230 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 TBPL1P62380 186 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 STX5Q13190 355 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 ZRSR2Q15696 482 aaKnown RBP13.38□□□□□ -0.27
PTPRF-202ENST00000372405 MLF2Q15773 248 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-202ENST00000372405 PTCRAQ6ISU1 281 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-202ENST00000372405 BLOC1S3Q6QNY0 202 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 UNC5DQ6UXZ4 953 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 CHST15Q7LFX5 561 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-202ENST00000372405 HPS6Q86YV9 775 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 PGAM4Q8N0Y7 254 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 OR9A1PQ8NGU1 263 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 HMGB4Q8WW32 186 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 ASB12Q8WXK4 309 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 UHRF1Q96T88 793 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-202ENST00000372405 C1QTNF7Q9BXJ2 289 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 WDR41Q9HAD4 459 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 SH2B3Q9UQQ2 575 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 WDR37Q9Y2I8 494 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 PLEKHM1Q9Y4G2 1056 aa13.38□□□□□ -0.27
PTPRF-202ENST00000372405 PCM1Q15154 2024 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 PRR19A6NJB7 356 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 H0Y8X5 98 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 ANKRD28O15084 1053 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 KRT6AP02538 564 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 KRT6BP04259 564 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 G6PDP11413 515 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 ACP5P13686 325 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 JUPP14923 745 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 HALP42357 657 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 KRT6CP48668 564 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 MTTPP55157 894 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 PCDH1Q08174 1060 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 DMPKQ09013 629 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 GRIK2Q13002 908 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 ART3Q13508 389 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 LEXMQ3ZCV2 418 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 VPS26BQ4G0F5 336 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 PDCD4Q53EL6 469 aaKnown RBP13.37□□□□□ -0.27
PTPRF-202ENST00000372405 TPRG1LQ5T0D9 272 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 C16orf89Q6UX73 402 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 RIPOR1Q6ZS17 1223 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 NET1Q7Z628 596 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-202ENST00000372405 TRIM69Q86WT6 500 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 RNF175Q8N4F7 328 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 PROKR1Q8TCW9 393 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 NUDT8Q8WV74 236 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 TFGQ92734 400 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-202ENST00000372405 GUCD1Q96NT3 240 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 MRPL1Q9BYD6 325 aaKnown RBP13.37□□□□□ -0.27
PTPRF-202ENST00000372405 BTBD1Q9H0C5 482 aa13.37□□□□□ -0.27
PTPRF-202ENST00000372405 NKX1-2Q9UD57 310 aaPredicted RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms