RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 PPP1R2P1Q96PQ5 205 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 CITED4Q96RK1 184 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 PITX2Q99697 317 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 DHRS9Q9BPW9 319 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 CHCHD6Q9BRQ6 235 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 COPS4Q9BT78 406 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 SP110Q9HB58 689 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 RPRD1BQ9NQG5 326 aaKnown RBP6.64□□□□□ -1.35
VPS39-202ENST00000348544 MUTYHQ9UIF7 546 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 BTBD3Q9Y2F9 522 aa6.64□□□□□ -1.35
VPS39-202ENST00000348544 COL4A4P53420 1690 aaPredicted RBP6.64□□□□□ -1.35
VPS39-202ENST00000348544 TNS1Q9HBL0 1735 aaKnown RBP6.64□□□□□ -1.35
VPS39-202ENST00000348544 A0A0B4J293 547 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 LCHNA4D1U4 455 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 HMX3A6NHT5 357 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 MYO1GB0I1T2 1018 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 LOC110117498-PIK3R3F6TDL0 507 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 J3KR12 359 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 BTN3A1O00481 513 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 PAGE1O75459 146 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 RHOBTB1O94844 696 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TSPAN12O95859 305 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 B3GALT4O96024 378 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 VIPP01282 170 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 C1QCP02747 245 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 PIRTP0C851 137 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 MYCLP1P12525 358 aaPredicted RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 PRKACBP22694 351 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 RPP38P78345 283 aaKnown RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 ITKQ08881 620 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 SLC10A7Q0GE19 358 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TP53BP2Q13625 1128 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 ABRAXAS2Q15018 415 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 NFE2Q16621 373 aaPredicted RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 SV2CQ496J9 727 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 MARCH8Q5T0T0 291 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 OR2T5Q6IEZ7 315 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 GALNT10Q86SR1 603 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 RAB43Q86YS6 212 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 OR8H2Q8N162 312 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 KRTCAP2Q8N6L1 136 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 GPR150Q8NGU9 434 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 OR5H6Q8NGV6 325 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 OR2T29Q8NH02 315 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 SLC7A6Q92536 515 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 PIK3R3Q92569 461 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 FCGR1BQ92637 280 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 RNF31Q96EP0 1072 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 PCED1BQ96HM7 432 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 ZNF382Q96SR6 550 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 KCNS3Q9BQ31 491 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 CCDC32Q9BV29 185 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 ROGDIQ9GZN7 287 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 MMP28Q9H239 520 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 C1orf109Q9NX04 203 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 PDP1Q9P0J1 537 aaPredicted RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 NUFIP1Q9UHK0 495 aaKnown RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 PSORS1C1Q9UIG5 152 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 DNMT3LQ9UJW3 386 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 GABRQQ9UN88 632 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 CCL27Q9Y4X3 112 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 UBA6A0AVT1 1052 aaPredicted RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 FAM220BPB1ANY3 271 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 hCG_2039718K7EN88 272 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 MEN1O00255 615 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 IFRD1O00458 451 aaPredicted RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 CDK2AP1O14519 115 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TFECO14948 347 aaPredicted RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 CYP7B1O75881 506 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 PTHP01270 115 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 KRT6AP02538 564 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 KRT6BP04259 564 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 CNPP09543 421 aaKnown RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 ADORA3P0DMS8 318 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 ITGA2P17301 1181 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 IL1RNP18510 177 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TNFSF8P32971 234 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 OR3A3P47888 321 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 STC1P52823 247 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 RPL38P63173 70 aaKnown RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 EIF4EBP2Q13542 120 aaPredicted RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 BAK1Q16611 211 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 MAPKAPK3Q16644 382 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 CDONQ4KMG0 1287 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 RAP1GAP2Q684P5 730 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TIGD7Q6NT04 549 aaPredicted RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 GLRX5Q86SX6 157 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 IFNL1Q8IU54 200 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 GRPEL2Q8TAA5 225 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 ZNF675Q8TD23 568 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TRIM63Q969Q1 353 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TBC1D20Q96BZ9 403 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 RIPOR3Q96MK2 946 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 TRNT1Q96Q11 434 aaKnown RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 MCCC1Q96RQ3 725 aaPredicted RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 GPR21Q99679 349 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 CPPED1Q9BRF8 314 aaPredicted RBP6.63□□□□□ -1.35
VPS39-202ENST00000348544 SPATC1LQ9H0A9 340 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 KRT84Q9NSB2 600 aa6.63□□□□□ -1.35
VPS39-202ENST00000348544 UXTQ9UBK9 157 aaPredicted RBP6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms