RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 GLB1L3Q8NCI6 653 aaPredicted RBP18.87■□□□□ 0.61
COL9A3-201ENST00000343916 EGLN2Q96KS0 407 aa18.87■□□□□ 0.61
COL9A3-201ENST00000343916 TCF25Q9BQ70 676 aa18.87■□□□□ 0.61
COL9A3-201ENST00000343916 LIMD1Q9UGP4 676 aa18.87■□□□□ 0.61
COL9A3-201ENST00000343916 CIDEBQ9UHD4 219 aa18.87■□□□□ 0.61
COL9A3-201ENST00000343916 ADGRE2Q9UHX3 823 aa18.87■□□□□ 0.61
COL9A3-201ENST00000343916 ZNF639Q9UID6 485 aa18.87■□□□□ 0.61
COL9A3-201ENST00000343916 INVSQ9Y283 1065 aa18.87■□□□□ 0.61
COL9A3-201ENST00000343916 TMEM202A6NGA9 273 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 GMNNO75496 209 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 CAPGP40121 348 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 ETV3P41162 512 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 RPS14P62263 151 aaKnown RBP18.86■□□□□ 0.61
COL9A3-201ENST00000343916 CHRNB3Q05901 458 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 GBX1Q14549 363 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 FAM98BQ52LJ0 330 aaKnown RBP18.86■□□□□ 0.61
COL9A3-201ENST00000343916 BORAQ6PGQ7 559 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 RNF165Q6ZSG1 346 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 SLC29A3Q9BZD2 475 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 LIN28AQ9H9Z2 209 aaKnown RBP18.86■□□□□ 0.61
COL9A3-201ENST00000343916 ZBBXA8MT70 800 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 NUAK1O60285 661 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 TULP3O75386 442 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 LEFTY1O75610 366 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 MTHFRP42898 656 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 LAPTM5Q13571 262 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 SMU1Q2TAY7 513 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 LY6G5CQ5SRR4 150 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 C1orf53Q5VUE5 145 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 ELMO1Q92556 727 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 FOXJ1Q92949 421 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 IRF7Q92985 503 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 APIPQ96GX9 242 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 INPP5KQ9BT40 448 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 RHBDL2Q9NX52 303 aa18.86■□□□□ 0.61
COL9A3-201ENST00000343916 HEMK1Q9Y5R4 338 aaPredicted RBP18.86■□□□□ 0.61
COL9A3-201ENST00000343916 KIAA0100Q14667 2235 aaKnown RBP18.86■□□□□ 0.61
COL9A3-201ENST00000343916 KCNE1BA0A087WTH5 132 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 TTC34A8MYJ7 566 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 TRMUO75648 421 aaKnown RBP18.85■□□□□ 0.61
COL9A3-201ENST00000343916 C8GP07360 202 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 YAP1P46937 504 aaKnown RBP18.85■□□□□ 0.61
COL9A3-201ENST00000343916 PPP1R8Q12972 351 aaKnown RBP18.85■□□□□ 0.61
COL9A3-201ENST00000343916 RUNDC3AQ59EK9 446 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 LRRC70Q7Z2Q7 622 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 ZNF366Q8N895 744 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 CEP44Q9C0F1 390 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 PKD2L2Q9NZM6 624 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 ELOVL7A1L3X0 281 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 UPK3BL1B0FP48 263 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 UPK3BL2E5RIL1 263 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 MOSPD3O75425 235 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 TIMP1P01033 207 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 C7P10643 843 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 SLC6A12P48065 614 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 TUBA4AP68366 448 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 KCTD21Q4G0X4 260 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 PLPP4Q5VZY2 271 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 STK32CQ86UX6 486 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 CCDC115Q96NT0 180 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 EMILIN2Q9BXX0 1053 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 GORASP2Q9H8Y8 452 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 SERHLQ9NQF3 203 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 TDP1Q9NUW8 608 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 ASIC5Q9NY37 505 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 KLHL42Q9P2K6 505 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 PPT2Q9UMR5 302 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 PCDHGA11Q9Y5H2 935 aa18.85■□□□□ 0.61
COL9A3-201ENST00000343916 PTPRSQ13332 1948 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 SGTAO43765 313 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 PFDN1O60925 122 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 DEAF1O75398 565 aaPredicted RBP18.84■□□□□ 0.61
COL9A3-201ENST00000343916 HALP42357 657 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 CDKN2CP42773 168 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 RECQLP46063 649 aaPredicted RBP18.84■□□□□ 0.61
COL9A3-201ENST00000343916 ARSFP54793 590 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 POLR2LP62875 67 aaKnown RBP18.84■□□□□ 0.61
COL9A3-201ENST00000343916 PGS1Q32NB8 556 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 ARSIQ5FYB1 569 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 CHST15Q7LFX5 561 aaPredicted RBP18.84■□□□□ 0.61
COL9A3-201ENST00000343916 PATL1Q86TB9 770 aaKnown RBP18.84■□□□□ 0.61
COL9A3-201ENST00000343916 HS3ST5Q8IZT8 346 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 OR10Q1Q8NGQ4 319 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 FAM162AQ96A26 154 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 APOLD1Q96LR9 279 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 PAIP1Q9H074 479 aaKnown RBP18.84■□□□□ 0.61
COL9A3-201ENST00000343916 CRISPLD2Q9H0B8 497 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 FAM83DQ9H4H8 585 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 KAT8Q9H7Z6 458 aaKnown RBP18.84■□□□□ 0.61
COL9A3-201ENST00000343916 CD320Q9NPF0 282 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 SPHK2Q9NRA0 654 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 WBP1LQ9NX94 342 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 RSL24D1Q9UHA3 163 aaKnown RBP18.84■□□□□ 0.61
COL9A3-201ENST00000343916 SNX6Q9UNH7 406 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 WNT6Q9Y6F9 365 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 PABPN1LA6NDY0 278 aaKnown RBP18.84■□□□□ 0.61
COL9A3-201ENST00000343916 H0Y858 1186 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 CXCR6O00574 342 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 C1QCP02747 245 aa18.84■□□□□ 0.61
COL9A3-201ENST00000343916 SDC1P18827 310 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms