RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 PRAF2O60831 178 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 DDNO94850 711 aaPredicted RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 GCP02774 474 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 CSF3P09919 207 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ODC1P11926 461 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 APEHP13798 732 aaKnown RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 UBA1P22314 1058 aaKnown RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 LHCGRP22888 699 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 DSG3P32926 999 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 HSPA7P48741 367 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 RPA4Q13156 261 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 UBE2SQ16763 222 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 LIPIQ6XZB0 460 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ADHFE1Q8IWW8 467 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ZMIZ2Q8NF64 920 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 CORO2AQ92828 525 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 TEPSINQ96N21 525 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 SLC38A2Q96QD8 506 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 FAM129BQ96TA1 746 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ELF4Q99607 663 aaPredicted RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 DPCDQ9BVM2 203 aaPredicted RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 SUV39H2Q9H5I1 410 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 SOX17Q9H6I2 414 aaPredicted RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 SLC28A3Q9HAS3 691 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 RBFOX1Q9NWB1 397 aaKnown RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 TMEM2Q9UHN6 1383 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ERCC6L2Q5T890 1561 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 SLC35F4A4IF30 521 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 TMEM189-UBE2V1I3L0A0 370 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 K7ERQ8 282 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 BPNT1O95861 308 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ALPLP05186 524 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 URODP06132 367 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ASGR1P07306 291 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ANXA5P08758 320 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 CHRM3P20309 590 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ATP5A1P25705 553 aaKnown RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ATP5C1P36542 298 aaKnown RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 BCAR1P56945 870 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 HUNKP57058 714 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ARHGAP19Q14CB8 494 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 CYBRD1Q53TN4 286 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 LRFN4Q6PJG9 635 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 FGD2Q7Z6J4 655 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 PEG10Q86TG7 708 aaKnown RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 DNAJC22Q8N4W6 341 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 OR5K1Q8NHB7 308 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 SLC5A11Q8WWX8 675 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 USP7Q93009 1102 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 REEP2Q9BRK0 252 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 NANSQ9NR45 359 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 COL20A1Q9P218 1284 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 PTPRJQ12913 1337 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 LNP1A1A4G5 178 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 H0YIV9 168 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 IFNB1P01574 187 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 HMGCRP04035 888 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 C2P06681 752 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 QDPRP09417 244 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 H2AFB1P0C5Y9 115 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 H2AFB2P0C5Z0 115 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 TSPAN19P0C672 248 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 LINC00614P0C842 121 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ERVK-10P10266 1014 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 AKAP5P24588 427 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 PPP2R1BP30154 601 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 MAPK9P45984 424 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ARSFP54793 590 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 PPP3CAQ08209 521 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 DSC1Q08554 894 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 SF3A2Q15428 464 aaKnown RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 TBCEQ15813 527 aaPredicted RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 AARDQ4LEZ3 155 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 MANEALQ5VSG8 457 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 PPP1R18Q6NYC8 613 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 MSANTD2Q6P1R3 559 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 FAM131AQ6UXB0 335 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ARL14Q8N4G2 192 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 MINDY1Q8N5J2 469 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 NIPA2Q8N8Q9 360 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 PAPD5Q8NDF8 572 aaKnown RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ZSCAN18Q8TBC5 510 aaPredicted RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ADAMTS19Q8TE59 1207 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ELP4Q96EB1 424 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 OTUB1Q96FW1 271 aaPredicted RBP4.07□□□□□ -1.76
NEDD4-201ENST00000338963 OR2A14Q96R47 310 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 RBBP8Q99708 897 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 PINK1Q9BXM7 581 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 SRRQ9GZT4 340 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 PCDHGB7Q9Y5F8 929 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 CNTNAP4Q9C0A0 1308 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 C2orf92A0A1B0GVN3 265 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 MTMR11A4FU01 709 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 OIP5O43482 229 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 PEX10O60683 326 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 ULK1O75385 1050 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 DNTTP04053 509 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 PRKCHP24723 683 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 CERS1P27544 350 aa4.07□□□□□ -1.76
NEDD4-201ENST00000338963 HTR2AP28223 471 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms