RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 CEP250Q9BV73 2442 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 IGHV5-10-1A0A0J9YXX1 117 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 NPEPPSL1A6NEC2 478 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 A8MU76 341 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 RFPL1O75677 317 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 RASSF9O75901 435 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 KLHL2O95198 593 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 C9P02748 559 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 ANXA5P08758 320 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 RBP1P09455 135 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 MPSTP25325 297 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 PRDX3P30048 256 aaKnown RBP11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 CCKBRP32239 447 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 MAGEA12P43365 314 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 ARL4DP49703 201 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 PNLIPRP1P54315 467 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 ACAP2Q15057 778 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 TSNQ15631 228 aaKnown RBP11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 TSNAXIP1Q2TAA8 658 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 BEND6Q5SZJ8 279 aaPredicted RBP11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 CACHD1Q5VU97 1274 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 SYTL1Q8IYJ3 562 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 IQCKQ8N0W5 287 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 CARFQ8N187 725 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 C2orf73Q8N5S3 287 aaPredicted RBP11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 EPS8L3Q8TE67 593 aaKnown RBP11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 KCTD4Q8WVF5 259 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 DLG3Q92796 817 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 IL17FQ96PD4 163 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 SEMA6CQ9H3T2 930 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 IGSF5Q9NSI5 407 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 KLHL3Q9UH77 587 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 OARD1Q9Y530 152 aa11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 TP53BP1Q12888 1972 aaPredicted RBP11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 ARHGEF17Q96PE2 2063 aaPredicted RBP11.53□□□□□ -0.56
SPTLC1-202ENST00000337841 USP34Q70CQ2 3546 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 SYCE1LA8MT33 242 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 CASC3O15234 703 aaKnown RBP11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 FKBP9O95302 570 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 GUCA1CO95843 209 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 SLC16A8O95907 504 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 S100BP04271 92 aaPredicted RBP11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 TFEBP19484 476 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 CDH3P22223 829 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 OAS2P29728 719 aaKnown RBP11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 CSF2RBP32927 897 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 CSTF2P33240 577 aaKnown RBP eCLIP11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 RPA3P35244 121 aaPredicted RBP11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 CSRP3P50461 194 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 KPNA2P52292 529 aaKnown RBP11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 CDKL1Q00532 357 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 TSTA3Q13630 321 aaPredicted RBP11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 SF1Q15637 639 aaKnown RBP11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 PHKG1Q16816 387 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 CDKL4Q5MAI5 379 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 AGTRAPQ6RW13 159 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 SBSNQ6UWP8 590 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 LRIG3Q6UXM1 1119 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 FAM92BQ6ZTR7 304 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 ARHGAP22Q7Z5H3 698 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 ISCA2Q86U28 154 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 LCA5Q86VQ0 697 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 SLITRK4Q8IW52 837 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 DENND1AQ8TEH3 1009 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 ZNF480Q8WV37 535 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 FBXL8Q96CD0 374 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 SCYL1Q96KG9 808 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 CCDC74BQ96LY2 380 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 NRTNQ99748 197 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 CMKLR1Q99788 373 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 EGFL8Q99944 293 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 MENTQ9BUN1 341 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 UNKQ9C0B0 810 aaKnown RBP11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 PCBD2Q9H0N5 130 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 ALG9Q9H6U8 611 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 C1GALT1Q9NS00 363 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 INTS7Q9NVH2 962 aaKnown RBP11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 UTP6Q9NYH9 597 aaKnown RBP11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 TMEM9Q9P0T7 183 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 DCDC2Q9UHG0 476 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 POMT2Q9UKY4 750 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 RNF112Q9ULX5 631 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 PCDHB11Q9Y5F2 797 aa11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 GOLGA4Q13439 2230 aaKnown RBP11.52□□□□□ -0.57
SPTLC1-202ENST00000337841 LAMA1P25391 3075 aa11.51□□□□□ -0.57
SPTLC1-202ENST00000337841 CCDC187A0A096LP49 1063 aa11.51□□□□□ -0.57
SPTLC1-202ENST00000337841 FAM149AA5PLN7 773 aa11.51□□□□□ -0.57
SPTLC1-202ENST00000337841 TLCD2A6NGC4 264 aa11.51□□□□□ -0.57
SPTLC1-202ENST00000337841 E7ENX8 843 aa11.51□□□□□ -0.57
SPTLC1-202ENST00000337841 HGSO14964 777 aaPredicted RBP11.51□□□□□ -0.57
SPTLC1-202ENST00000337841 HYAL3O43820 417 aaPredicted RBP11.51□□□□□ -0.57
SPTLC1-202ENST00000337841 THRAP10827 490 aa11.51□□□□□ -0.57
SPTLC1-202ENST00000337841 ERGP11308 486 aa11.51□□□□□ -0.57
SPTLC1-202ENST00000337841 UGT2B7P16662 529 aa11.51□□□□□ -0.57
SPTLC1-202ENST00000337841 CCND1P24385 295 aa11.51□□□□□ -0.57
SPTLC1-202ENST00000337841 CCT5P48643 541 aa11.51□□□□□ -0.57
SPTLC1-202ENST00000337841 HNMTP50135 292 aa11.51□□□□□ -0.57
SPTLC1-202ENST00000337841 GFERP55789 205 aa11.51□□□□□ -0.57
SPTLC1-202ENST00000337841 CLDN6P56747 220 aa11.51□□□□□ -0.57
SPTLC1-202ENST00000337841 IRF9Q00978 393 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms