RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 CLDN10P78369 228 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 NRG1Q02297 640 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-201ENST00000303395 ZNF177Q13360 481 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-201ENST00000303395 LLGL1Q15334 1064 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 CLPPQ16740 277 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-201ENST00000303395 ABCA11PQ4W5N1 156 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 FGD3Q5JSP0 725 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 SLC9B2Q86UD5 537 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 CBWD2Q8IUF1 395 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 RNF149Q8NC42 400 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 GSTCDQ8NEC7 633 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 BBS1Q8NFJ9 593 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 OR10H5Q8NGA6 315 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 OR8J1Q8NGP2 316 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 TBC1D20Q96BZ9 403 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 EXOC2Q96KP1 924 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 PDZD7Q9H5P4 517 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 SLC22A11Q9NSA0 550 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 B3GNT2Q9NY97 397 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 ANKMY1Q9P2S6 941 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 SAMHD1Q9Y3Z3 626 aaKnown RBP5.15□□□□□ -1.59
SCN1A-201ENST00000303395 A0A1W2PRB8 838 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 OR6C75A6NL08 312 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 XKRYO14609 159 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 PHYHO14832 338 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 WNT9AO14904 365 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 DCLK1O15075 740 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 NDST3O95803 873 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 RHOQP17081 205 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 TYMPP19971 482 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 PBLDP30039 288 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-201ENST00000303395 CLCN4P51793 760 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 PHC1P78364 1004 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 SLC10A7Q0GE19 358 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 COL28A1Q2UY09 1125 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 OR2T5Q6IEZ7 315 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 RNF165Q6ZSG1 346 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 SNX20Q7Z614 316 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 INO80EQ8NBZ0 244 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-201ENST00000303395 OR2T29Q8NH02 315 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 CPB2Q96IY4 423 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 TPD52L3Q96J77 140 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 RIPOR3Q96MK2 946 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 DPAGT1Q9H3H5 408 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 CDHR5Q9HBB8 845 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 MED17Q9NVC6 651 aa5.15□□□□□ -1.59
SCN1A-201ENST00000303395 CCDC163A0A0D9SF12 145 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 A0A0J9YYE9 177 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 L7N2F9 121 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 PPEF2O14830 753 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 ACOX3O15254 700 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 CILPO75339 1184 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 RFPL2O75678 378 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 UPP2O95045 317 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 INMTO95050 263 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 C2P06681 752 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 IL7P13232 177 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 S100A7P31151 101 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 AQP4P55087 323 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 VAMP2P63027 116 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 RPP38P78345 283 aaKnown RBP5.14□□□□□ -1.59
SCN1A-201ENST00000303395 MBLAC2Q68D91 279 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 ZNF280DQ6N043 979 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 KIAA1211LQ6NV74 962 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 FIGNL1Q6PIW4 674 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 RNF130Q86XS8 419 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 GALNT12Q8IXK2 581 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 CLDN22Q8N7P3 220 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 TXNDC5Q8NBS9 432 aaKnown RBP5.14□□□□□ -1.59
SCN1A-201ENST00000303395 MTMR14Q8NCE2 650 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 OR2L8Q8NGY9 312 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 RPL3LQ92901 407 aaKnown RBP5.14□□□□□ -1.59
SCN1A-201ENST00000303395 CSPG4P5Q96PW8 444 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 SYT4Q9H2B2 425 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 COL20A1Q9P218 1284 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 PLEKHA6Q9Y2H5 1048 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 OR10H1Q9Y4A9 318 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 LTN1O94822 1766 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 IGKV6D-41A0A0C4DH26 115 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 E2F8A0AVK6 867 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 TGFB1I1O43294 461 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 CSTBP04080 98 aaKnown RBP5.14□□□□□ -1.59
SCN1A-201ENST00000303395 AMD1P17707 334 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 RAB4AP20338 218 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 PTPN6P29350 595 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 BTG1P62324 171 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 CREB5Q02930 508 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 SWSAP1Q6NVH7 229 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 KCTD8Q6ZWB6 473 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 CEP68Q76N32 757 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 ZC3HC1Q86WB0 502 aaKnown RBP5.14□□□□□ -1.59
SCN1A-201ENST00000303395 LPGAT1Q92604 370 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 ZBED3Q96IU2 234 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-201ENST00000303395 TMEM74Q96NL1 305 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 DCUN1D5Q9BTE7 237 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 PRDM12Q9H4Q4 367 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 SIX2Q9NPC8 291 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 UBQLN2Q9UHD9 624 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 TMPRSS11EQ9UL52 423 aa5.14□□□□□ -1.59
SCN1A-201ENST00000303395 ZNRF3Q9ULT6 936 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms