RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 CDKN1CP49918 316 aaPredicted RBP13.17□□□□□ -0.3
SKA3-201ENST00000298260 HK3P52790 923 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 HMGCS1Q01581 520 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 DUSP7Q16829 419 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 SPATS1Q496A3 300 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 ARMCX4Q5H9R4 360 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 WSCD1Q658N2 575 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 DPP10Q8N608 796 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 LSMEM1Q8N8F7 131 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 ZMIZ2Q8NF64 920 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 COQ8BQ96D53 544 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 RAD18Q9NS91 495 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 FARSBQ9NSD9 589 aaKnown RBP13.17□□□□□ -0.3
SKA3-201ENST00000298260 DCAF13Q9NV06 445 aaKnown RBP13.17□□□□□ -0.3
SKA3-201ENST00000298260 A0A1W2PQ09 198 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 J3KR12 359 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 ZNF780AO75290 641 aaPredicted RBP13.17□□□□□ -0.3
SKA3-201ENST00000298260 SLC2A3P11169 496 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 SCNN1AP37088 669 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 UGT2B15P54855 530 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 DAOAP59103 153 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 TUBA1BP68363 451 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 SLC14A1Q13336 389 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 EFR3AQ14156 821 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 ABRAXAS2Q15018 415 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 GPAT3Q53EU6 434 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 FKBP1CQ5VVH2 108 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 FAM205BPQ63HN1 556 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 TUBA1AQ71U36 451 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 METTL6Q8TCB7 284 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 ZNF675Q8TD23 568 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 TSPEARQ8WU66 669 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 SLC13A3Q8WWT9 602 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 SLC7A6Q92536 515 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 OR5M11Q96RB7 305 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 TSEN34Q9BSV6 310 aaKnown RBP13.17□□□□□ -0.3
SKA3-201ENST00000298260 RERGLQ9H628 205 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 ZIM2Q9NZV7 527 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 KIF17Q9P2E2 1029 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 PCTPQ9UKL6 214 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 LYVE1Q9Y5Y7 322 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 PARP14Q460N5 1801 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 A8MX80 341 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 RECQL4O94761 1208 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 RHOBTB1O94844 696 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 RPLP0P05388 317 aaKnown RBP13.17□□□□□ -0.3
SKA3-201ENST00000298260 UROSP10746 265 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 ITGAMP11215 1152 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 MSH3P20585 1137 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 PGFP49763 221 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 NKX3-2P78367 333 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 SLC10A7Q0GE19 358 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 SMARCB1Q12824 385 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 MAPKAPK3Q16644 382 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 SETMARQ53H47 684 aaPredicted RBP13.17□□□□□ -0.3
SKA3-201ENST00000298260 DCAF15Q66K64 600 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 SLC46A3Q7Z3Q1 461 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 HIPK1Q86Z02 1210 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 SLC44A2Q8IWA5 706 aaPredicted RBP13.17□□□□□ -0.3
SKA3-201ENST00000298260 LAX1Q8IWV1 398 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 FUBP1Q96AE4 644 aaKnown RBP13.17□□□□□ -0.3
SKA3-201ENST00000298260 ASB2Q96Q27 587 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 SLC30A2Q9BRI3 323 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 SLA2Q9H6Q3 261 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 SARS2Q9NP81 518 aaKnown RBP13.17□□□□□ -0.3
SKA3-201ENST00000298260 EXOSC4Q9NPD3 245 aaKnown RBP13.17□□□□□ -0.3
SKA3-201ENST00000298260 KRT84Q9NSB2 600 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 IPPQ9Y573 584 aa13.17□□□□□ -0.3
SKA3-201ENST00000298260 MCM3APO60318 1980 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 PLXNA1Q9UIW2 1896 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 STAU1O95793 577 aaKnown RBP13.16□□□□□ -0.3
SKA3-201ENST00000298260 YES1P07947 543 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 CHRM5P08912 532 aaPredicted RBP13.16□□□□□ -0.3
SKA3-201ENST00000298260 CCNYL3P0C7X3 344 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 IL7P13232 177 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 IDH2P48735 452 aaKnown RBP13.16□□□□□ -0.3
SKA3-201ENST00000298260 VLDLRP98155 873 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 GALNT3Q14435 633 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 DPY19L3Q6ZPD9 716 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 GPRIN3Q6ZVF9 776 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 VN1R5Q7Z5H4 357 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 CCDC190Q86UF4 302 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 AMIGO1Q86WK6 493 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 P3H2Q8IVL5 708 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 NTAN1Q96AB6 310 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 CYP2S1Q96SQ9 504 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 SMOQ99835 787 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 APOL4Q9BPW4 351 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 HDHD5Q9BXW7 423 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 ELP3Q9H9T3 547 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 KCNN3Q9UGI6 736 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 FBXO9Q9UK97 447 aaPredicted RBP13.16□□□□□ -0.3
SKA3-201ENST00000298260 NDRG4Q9ULP0 352 aaKnown RBP13.16□□□□□ -0.3
SKA3-201ENST00000298260 SATB2Q9UPW6 733 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 ARIH1Q9Y4X5 557 aaPredicted RBP13.16□□□□□ -0.3
SKA3-201ENST00000298260 RLFQ13129 1914 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 MYBPHLA2RUH7 354 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 MATN3O15232 486 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 OR1I1O60431 355 aa13.16□□□□□ -0.3
SKA3-201ENST00000298260 TLR5O60602 858 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms