RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 TULP3O75386 442 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 DEAF1O75398 565 aaPredicted RBP17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 BMP10O95393 424 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 HALP42357 657 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 CDKN2CP42773 168 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 ARSFP54793 590 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 ANKRD34AQ69YU3 496 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 ABRAXAS1Q6UWZ7 409 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 ADIPOR2Q86V24 386 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 TNIP2Q8NFZ5 429 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 TRIM43Q96BQ3 446 aaPredicted RBP17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 EBPLQ9BY08 206 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 A0A087WXM4 84 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 PABPN1LA6NDY0 278 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 ZBBXA8MT70 800 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 TTC34A8MYJ7 566 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 CXCR6O00574 342 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 PRKD3O94806 890 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 C1QCP02747 245 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 ASLP04424 464 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 ADH1AP07327 375 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 ERVFC1P60507 584 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 LY6G5CQ5SRR4 150 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 METTL2BQ6P1Q9 378 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 PATL1Q86TB9 770 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 ZNF366Q8N895 744 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 APOLD1Q96LR9 279 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 MUS81Q96NY9 551 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 PAIP1Q9H074 479 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 GORASP2Q9H8Y8 452 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 CD320Q9NPF0 282 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 PPT2Q9UMR5 302 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 SNX6Q9UNH7 406 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 KIAA1671Q9BY89 1806 aa17.88■□□□□ 0.45
SHKBP1-201ENST00000291842 NUP214P35658 2090 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 KCNE1BA0A087WTH5 132 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 NUAK1O60285 661 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 LEFTY1O75610 366 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 TRMUO75648 421 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 ALBP02768 609 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 C8GP07360 202 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 C7P10643 843 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 MYCLP1P12525 358 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 S100A3P33764 101 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 ADARB1P78563 741 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 SMU1Q2TAY7 513 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 ARSIQ5FYB1 569 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 LRRC70Q7Z2Q7 622 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 IRF7Q92985 503 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 SLC47A1Q96FL8 570 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 CCDC115Q96NT0 180 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 PHF12Q96QT6 1004 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 TCF25Q9BQ70 676 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 FAM83DQ9H4H8 585 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 SMURF2Q9HAU4 748 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 SERHLQ9NQF3 203 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 GPRC5BQ9NZH0 403 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 PKD2L2Q9NZM6 624 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 LTBP2Q14767 1821 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 B4GAT1O43505 415 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 NOBOXO60393 691 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 CST1P01037 141 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 SDC1P18827 310 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 ELK4P28324 431 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 RECQLP46063 649 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 SLC6A12P48065 614 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 CREMQ03060 361 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 ABRQ12979 859 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 GBX1Q14549 363 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 SF1Q15637 639 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 LRRC26Q2I0M4 334 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 PLPP4Q5VZY2 271 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 RNF165Q6ZSG1 346 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 NECAB2Q7Z6G3 386 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 KAT8Q9H7Z6 458 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 C8orf4Q9NR00 106 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 ASIC5Q9NY37 505 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 THEGQ9P2T0 379 aa17.87■□□□□ 0.45
SHKBP1-201ENST00000291842 SH3BGRLO75368 114 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 CLDN8P56748 225 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 NTHL1P78549 312 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 CHIT1Q13231 466 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 GPR141Q7Z602 305 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 CLVS1Q8IUQ0 354 aaPredicted RBP17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 LILRA3Q8N6C8 439 aaPredicted RBP17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 NETO1Q8TDF5 533 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 RIOK2Q9BVS4 552 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 EMILIN2Q9BXX0 1053 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 UGT2B28Q9BY64 529 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 PCDH12Q9NPG4 1184 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 EBF1Q9UH73 591 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 WNT6Q9Y6F9 365 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 G3V2T6 193 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 GNGT2O14610 69 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 SGTAO43765 313 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 ALPLP05186 524 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 LINC00271P0C7V0 271 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 CDK9P50750 372 aaKnown RBP17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 ALDH3A2P51648 485 aa17.86■□□□□ 0.45
SHKBP1-201ENST00000291842 POLR2LP62875 67 aaKnown RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms