RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 NUTM2FA1L443 756 aa24.59■■□□□ 1.53
SYNGAP1-227ENST00000638142 HTATSF1O43719 755 aaKnown RBP24.59■■□□□ 1.53
SYNGAP1-227ENST00000638142 GNAI3P08754 354 aa24.59■■□□□ 1.53
SYNGAP1-227ENST00000638142 ZDHHC9Q9Y397 364 aa24.59■■□□□ 1.53
SYNGAP1-227ENST00000638142 IGSF1Q8N6C5 1336 aa24.59■■□□□ 1.53
SYNGAP1-227ENST00000638142 NCLP19338 710 aaKnown RBP24.59■■□□□ 1.53
SYNGAP1-227ENST00000638142 LRRCC1Q9C099 1032 aa24.59■■□□□ 1.53
SYNGAP1-227ENST00000638142 RIMS1Q86UR5 1692 aaKnown RBP24.59■■□□□ 1.53
SYNGAP1-227ENST00000638142 SOX12O15370 315 aa24.58■■□□□ 1.53
SYNGAP1-227ENST00000638142 TUBGCP6Q96RT7 1819 aa24.58■■□□□ 1.53
SYNGAP1-227ENST00000638142 HSP90AA2PQ14568 343 aaPredicted RBP24.58■■□□□ 1.53
SYNGAP1-227ENST00000638142 EXOC6BQ9Y2D4 811 aa24.58■■□□□ 1.53
SYNGAP1-227ENST00000638142 LRRC37A3O60309 1634 aa24.58■■□□□ 1.52
SYNGAP1-227ENST00000638142 KIF13AQ9H1H9 1805 aa24.57■■□□□ 1.52
SYNGAP1-227ENST00000638142 ESYT1Q9BSJ8 1104 aa24.57■■□□□ 1.52
SYNGAP1-227ENST00000638142 MCCP23508 829 aa24.57■■□□□ 1.52
SYNGAP1-227ENST00000638142 CCDC30Q5VVM6 783 aa24.56■■□□□ 1.52
SYNGAP1-227ENST00000638142 FAM208AQ9UK61 1670 aaKnown RBP24.56■■□□□ 1.52
SYNGAP1-227ENST00000638142 SOS1Q07889 1333 aaPredicted RBP24.56■■□□□ 1.52
SYNGAP1-227ENST00000638142 PRPF40AO75400 957 aaKnown RBP24.56■■□□□ 1.52
SYNGAP1-227ENST00000638142 MX1P20591 662 aa24.56■■□□□ 1.52
SYNGAP1-227ENST00000638142 NEK4P51957 841 aa24.56■■□□□ 1.52
SYNGAP1-227ENST00000638142 ANAPC15P60006 121 aa24.56■■□□□ 1.52
SYNGAP1-227ENST00000638142 FLIIQ13045 1269 aa24.56■■□□□ 1.52
SYNGAP1-227ENST00000638142 ZSCAN30Q86W11 494 aa24.56■■□□□ 1.52
SYNGAP1-227ENST00000638142 EYA1Q99502 592 aa24.55■■□□□ 1.52
SYNGAP1-227ENST00000638142 CEP170BQ9Y4F5 1589 aaPredicted RBP24.55■■□□□ 1.52
SYNGAP1-227ENST00000638142 ATP8B2P98198 1209 aa24.55■■□□□ 1.52
SYNGAP1-227ENST00000638142 TMX3Q96JJ7 454 aa24.55■■□□□ 1.52
SYNGAP1-227ENST00000638142 PTPRUQ92729 1446 aa24.54■■□□□ 1.52
SYNGAP1-227ENST00000638142 XRN1Q8IZH2 1706 aaKnown RBP24.54■■□□□ 1.52
SYNGAP1-227ENST00000638142 TPM2P07951 284 aa24.54■■□□□ 1.52
SYNGAP1-227ENST00000638142 SRCIN1Q9C0H9 1055 aa24.54■■□□□ 1.52
SYNGAP1-227ENST00000638142 GPT2Q8TD30 523 aa24.54■■□□□ 1.52
SYNGAP1-227ENST00000638142 AMPHP49418 695 aa24.53■■□□□ 1.52
SYNGAP1-227ENST00000638142 FKBP5Q13451 457 aaPredicted RBP24.53■■□□□ 1.52
SYNGAP1-227ENST00000638142 STAP2Q9UGK3 403 aa24.53■■□□□ 1.52
SYNGAP1-227ENST00000638142 CUL4AQ13619 759 aa24.53■■□□□ 1.52
SYNGAP1-227ENST00000638142 HS1BP3Q53T59 392 aa24.53■■□□□ 1.52
SYNGAP1-227ENST00000638142 LTKP29376 864 aa24.52■■□□□ 1.52
SYNGAP1-227ENST00000638142 IL17RAQ96F46 866 aa24.52■■□□□ 1.52
SYNGAP1-227ENST00000638142 N4BP2Q86UW6 1770 aaPredicted RBP24.52■■□□□ 1.52
SYNGAP1-227ENST00000638142 PXDNLA1KZ92 1463 aa24.52■■□□□ 1.52
SYNGAP1-227ENST00000638142 CACNA1FO60840 1977 aa24.52■■□□□ 1.52
SYNGAP1-227ENST00000638142 PNMA6EA0A0J9YXQ4 647 aa24.51■■□□□ 1.51
SYNGAP1-227ENST00000638142 CHMLP26374 656 aa24.51■■□□□ 1.51
SYNGAP1-227ENST00000638142 AOX1Q06278 1338 aa24.51■■□□□ 1.51
SYNGAP1-227ENST00000638142 TSHZ3Q63HK5 1081 aa24.51■■□□□ 1.51
SYNGAP1-227ENST00000638142 INTS4Q96HW7 963 aaKnown RBP24.51■■□□□ 1.51
SYNGAP1-227ENST00000638142 RBSNQ9H1K0 784 aa24.5■■□□□ 1.51
SYNGAP1-227ENST00000638142 GNAT3A8MTJ3 354 aa24.5■■□□□ 1.51
SYNGAP1-227ENST00000638142 MBD3O95983 291 aa24.5■■□□□ 1.51
SYNGAP1-227ENST00000638142 BABAM1Q9NWV8 329 aa24.5■■□□□ 1.51
SYNGAP1-227ENST00000638142 EPB41L2O43491 1005 aaKnown RBP24.49■■□□□ 1.51
SYNGAP1-227ENST00000638142 PRIM1P49642 420 aaKnown RBP24.49■■□□□ 1.51
SYNGAP1-227ENST00000638142 BRD1O95696 1058 aa24.49■■□□□ 1.51
SYNGAP1-227ENST00000638142 PDLIM2Q96JY6 352 aa24.49■■□□□ 1.51
SYNGAP1-227ENST00000638142 NGDNQ8NEJ9 315 aaKnown RBP24.48■■□□□ 1.51
SYNGAP1-227ENST00000638142 ANO2Q9NQ90 1003 aa24.48■■□□□ 1.51
SYNGAP1-227ENST00000638142 PIK3C2AO00443 1686 aa24.48■■□□□ 1.51
SYNGAP1-227ENST00000638142 TRIM6-TRIM34B2RNG4 842 aa24.47■■□□□ 1.51
SYNGAP1-227ENST00000638142 MSNP26038 577 aaKnown RBP24.47■■□□□ 1.51
SYNGAP1-227ENST00000638142 LRSAM1Q6UWE0 723 aa24.47■■□□□ 1.51
SYNGAP1-227ENST00000638142 RILPL2Q969X0 211 aa24.47■■□□□ 1.51
SYNGAP1-227ENST00000638142 RBM27Q9P2N5 1060 aaKnown RBP24.47■■□□□ 1.51
SYNGAP1-227ENST00000638142 PALD1Q9ULE6 856 aa24.47■■□□□ 1.51
SYNGAP1-227ENST00000638142 LRRFIP2Q9Y608 721 aaKnown RBP24.46■■□□□ 1.51
SYNGAP1-227ENST00000638142 TMEM63CQ9P1W3 806 aa24.46■■□□□ 1.51
SYNGAP1-227ENST00000638142 SLC26A8Q96RN1 970 aa24.45■■□□□ 1.51
SYNGAP1-227ENST00000638142 MAP3K5Q99683 1374 aa24.45■■□□□ 1.51
SYNGAP1-227ENST00000638142 DIP2AQ14689 1571 aa24.45■■□□□ 1.5
SYNGAP1-227ENST00000638142 AMOTL2Q9Y2J4 779 aa24.45■■□□□ 1.5
SYNGAP1-227ENST00000638142 EID1Q9Y6B2 187 aa24.44■■□□□ 1.5
SYNGAP1-227ENST00000638142 OFD1O75665 1012 aa24.44■■□□□ 1.5
SYNGAP1-227ENST00000638142 UBTFL1P0CB47 393 aaPredicted RBP24.43■■□□□ 1.5
SYNGAP1-227ENST00000638142 USP44Q9H0E7 712 aa24.43■■□□□ 1.5
SYNGAP1-227ENST00000638142 TAF7Q15545 349 aaPredicted RBP24.43■■□□□ 1.5
SYNGAP1-227ENST00000638142 SSH3Q8TE77 659 aa24.42■■□□□ 1.5
SYNGAP1-227ENST00000638142 NWD1Q149M9 1564 aa24.42■■□□□ 1.5
SYNGAP1-227ENST00000638142 RAB11FIP3O75154 756 aa24.41■■□□□ 1.5
SYNGAP1-227ENST00000638142 IL17REQ8NFR9 667 aa24.41■■□□□ 1.5
SYNGAP1-227ENST00000638142 NECTIN2Q92692 538 aa24.41■■□□□ 1.5
SYNGAP1-227ENST00000638142 NOL7Q9UMY1 257 aaKnown RBP24.41■■□□□ 1.5
SYNGAP1-227ENST00000638142 TBX22Q9Y458 520 aa24.41■■□□□ 1.5
SYNGAP1-227ENST00000638142 SYCE3A1L190 88 aa24.41■■□□□ 1.5
SYNGAP1-227ENST00000638142 HOXC9P31274 260 aa24.41■■□□□ 1.5
SYNGAP1-227ENST00000638142 KIAA1211Q6ZU35 1233 aa24.41■■□□□ 1.5
SYNGAP1-227ENST00000638142 CHAMP1Q96JM3 812 aa24.41■■□□□ 1.5
SYNGAP1-227ENST00000638142 TERF1P54274 439 aa24.4■■□□□ 1.5
SYNGAP1-227ENST00000638142 NLRP6P59044 892 aa24.4■■□□□ 1.5
SYNGAP1-227ENST00000638142 FOXD4L5Q5VV16 416 aaPredicted RBP24.4■■□□□ 1.5
SYNGAP1-227ENST00000638142 UNC5CLQ8IV45 518 aa24.4■■□□□ 1.5
SYNGAP1-227ENST00000638142 FOXD4L4Q8WXT5 416 aaPredicted RBP24.4■■□□□ 1.5
SYNGAP1-227ENST00000638142 NSFL1CQ9UNZ2 370 aaKnown RBP24.4■■□□□ 1.5
SYNGAP1-227ENST00000638142 RGPD8O14715 1765 aaPredicted RBP24.4■■□□□ 1.5
SYNGAP1-227ENST00000638142 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.4■■□□□ 1.5
SYNGAP1-227ENST00000638142 SLIT1O75093 1534 aa24.39■■□□□ 1.49
SYNGAP1-227ENST00000638142 USP54Q70EL1 1684 aa24.38■■□□□ 1.49
SYNGAP1-227ENST00000638142 HSPA4P34932 840 aa24.38■■□□□ 1.49
SYNGAP1-227ENST00000638142 ANKARQ7Z5J8 1434 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms