RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 SEPT12Q8IYM1 358 aa23.38■■□□□ 1.33
CLN3-263ENST00000637871 RWDD1Q9H446 243 aaPredicted RBP23.38■■□□□ 1.33
CLN3-263ENST00000637871 SHANK3Q9BYB0 1731 aa23.38■■□□□ 1.33
CLN3-263ENST00000637871 RAPGEF4Q8WZA2 1011 aa23.37■■□□□ 1.33
CLN3-263ENST00000637871 OVOS2A0A0G2JMS6 1433 aa23.37■■□□□ 1.33
CLN3-263ENST00000637871 TATP17735 454 aaPredicted RBP23.35■■□□□ 1.33
CLN3-263ENST00000637871 BCL2L13Q9BXK5 485 aa23.35■■□□□ 1.33
CLN3-263ENST00000637871 PKD1L3Q7Z443 1732 aa23.35■■□□□ 1.33
CLN3-263ENST00000637871 ONECUT3O60422 494 aaPredicted RBP23.34■■□□□ 1.33
CLN3-263ENST00000637871 RLBP1P12271 317 aa23.34■■□□□ 1.33
CLN3-263ENST00000637871 TNS2Q63HR2 1409 aa23.34■■□□□ 1.33
CLN3-263ENST00000637871 VAMP4O75379 141 aa23.33■■□□□ 1.32
CLN3-263ENST00000637871 TRIM27P14373 513 aa23.33■■□□□ 1.32
CLN3-263ENST00000637871 FAM182BQ5T319 152 aa23.33■■□□□ 1.32
CLN3-263ENST00000637871 HTATSF1O43719 755 aaKnown RBP23.32■■□□□ 1.32
CLN3-263ENST00000637871 DDB1Q16531 1140 aa23.32■■□□□ 1.32
CLN3-263ENST00000637871 FAM161AQ3B820 660 aa23.32■■□□□ 1.32
CLN3-263ENST00000637871 NOB1Q9ULX3 412 aaKnown RBP23.32■■□□□ 1.32
CLN3-263ENST00000637871 EP400Q96L91 3159 aa23.32■■□□□ 1.32
CLN3-263ENST00000637871 IGHDP01880 384 aa23.31■■□□□ 1.32
CLN3-263ENST00000637871 LAS1LQ9Y4W2 734 aaKnown RBP23.31■■□□□ 1.32
CLN3-263ENST00000637871 ERICH6Q7L0X2 663 aa23.3■■□□□ 1.32
CLN3-263ENST00000637871 ANP32EQ9BTT0 268 aa23.3■■□□□ 1.32
CLN3-263ENST00000637871 CDCA7Q9BWT1 371 aaPredicted RBP23.3■■□□□ 1.32
CLN3-263ENST00000637871 MBIPQ9NS73 344 aa23.3■■□□□ 1.32
CLN3-263ENST00000637871 GAS2L2Q8NHY3 880 aa23.3■■□□□ 1.32
CLN3-263ENST00000637871 IPO9Q96P70 1041 aaKnown RBP23.3■■□□□ 1.32
CLN3-263ENST00000637871 ZCRB1Q8TBF4 217 aaKnown RBP23.29■■□□□ 1.32
CLN3-263ENST00000637871 DDX54Q8TDD1 881 aaKnown RBP23.29■■□□□ 1.32
CLN3-263ENST00000637871 DLG5Q8TDM6 1919 aa23.28■■□□□ 1.32
CLN3-263ENST00000637871 EXOC5O00471 708 aa23.28■■□□□ 1.32
CLN3-263ENST00000637871 CHL1O00533 1208 aa23.27■■□□□ 1.32
CLN3-263ENST00000637871 HDAC1Q13547 482 aaPredicted RBP23.27■■□□□ 1.32
CLN3-263ENST00000637871 TWISTNBQ3B726 338 aaPredicted RBP23.27■■□□□ 1.32
CLN3-263ENST00000637871 MSH5O43196 834 aa23.26■■□□□ 1.31
CLN3-263ENST00000637871 MRPL50Q8N5N7 158 aaKnown RBP23.26■■□□□ 1.31
CLN3-263ENST00000637871 MARCH10Q8NA82 808 aaPredicted RBP23.26■■□□□ 1.31
CLN3-263ENST00000637871 PCDHB15Q9Y5E8 787 aa23.26■■□□□ 1.31
CLN3-263ENST00000637871 ILDR2Q71H61 639 aa23.26■■□□□ 1.31
CLN3-263ENST00000637871 API5Q9BZZ5 524 aaKnown RBP23.26■■□□□ 1.31
CLN3-263ENST00000637871 CYP27B1O15528 508 aa23.25■■□□□ 1.31
CLN3-263ENST00000637871 MTHFSDQ2M296 383 aaKnown RBP23.25■■□□□ 1.31
CLN3-263ENST00000637871 KRT27Q7Z3Y8 459 aa23.25■■□□□ 1.31
CLN3-263ENST00000637871 ZNF530Q6P9A1 599 aaPredicted RBP23.24■■□□□ 1.31
CLN3-263ENST00000637871 ITPRIPQ8IWB1 547 aa23.24■■□□□ 1.31
CLN3-263ENST00000637871 RTF1Q92541 710 aaKnown RBP23.24■■□□□ 1.31
CLN3-263ENST00000637871 THUMPD2Q9BTF0 503 aaKnown RBP23.24■■□□□ 1.31
CLN3-263ENST00000637871 TNNQ9UQP3 1299 aa23.24■■□□□ 1.31
CLN3-263ENST00000637871 PLEKHO1Q53GL0 409 aaPredicted RBP23.23■■□□□ 1.31
CLN3-263ENST00000637871 SPG7Q9UQ90 795 aa23.23■■□□□ 1.31
CLN3-263ENST00000637871 PCDH11XQ9BZA7 1347 aa23.23■■□□□ 1.31
CLN3-263ENST00000637871 PCDH11YQ9BZA8 1340 aa23.23■■□□□ 1.31
CLN3-263ENST00000637871 DDRGK1Q96HY6 314 aa23.22■■□□□ 1.31
CLN3-263ENST00000637871 ZBTB40Q9NUA8 1239 aa23.22■■□□□ 1.31
CLN3-263ENST00000637871 BABAM1Q9NWV8 329 aa23.22■■□□□ 1.31
CLN3-263ENST00000637871 SOS1Q07889 1333 aaPredicted RBP23.21■■□□□ 1.31
CLN3-263ENST00000637871 TMEM57Q8N5G2 664 aa23.21■■□□□ 1.31
CLN3-263ENST00000637871 TOGARAM1Q9Y4F4 1720 aa23.2■■□□□ 1.3
CLN3-263ENST00000637871 AMOTQ4VCS5 1084 aa23.2■■□□□ 1.3
CLN3-263ENST00000637871 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.2■■□□□ 1.3
CLN3-263ENST00000637871 NOP58Q9Y2X3 529 aaKnown RBP23.2■■□□□ 1.3
CLN3-263ENST00000637871 DOT1LQ8TEK3 1739 aa23.2■■□□□ 1.3
CLN3-263ENST00000637871 PHKG2P15735 406 aa23.19■■□□□ 1.3
CLN3-263ENST00000637871 RGS3P49796 1198 aa23.19■■□□□ 1.3
CLN3-263ENST00000637871 ZBTB47Q9UFB7 747 aaPredicted RBP23.19■■□□□ 1.3
CLN3-263ENST00000637871 TSPYL6Q8N831 410 aa23.19■■□□□ 1.3
CLN3-263ENST00000637871 VIRMAQ69YN4 1812 aaKnown RBP23.18■■□□□ 1.3
CLN3-263ENST00000637871 PLEKHG2Q9H7P9 1386 aa23.18■■□□□ 1.3
CLN3-263ENST00000637871 C8orf58Q8NAV2 365 aa23.18■■□□□ 1.3
CLN3-263ENST00000637871 ABCC4O15439 1325 aa23.17■■□□□ 1.3
CLN3-263ENST00000637871 C8orf34Q49A92 452 aa23.17■■□□□ 1.3
CLN3-263ENST00000637871 C1orf141Q5JVX7 400 aa23.16■■□□□ 1.3
CLN3-263ENST00000637871 IFNL2Q8IZJ0 200 aa23.16■■□□□ 1.3
CLN3-263ENST00000637871 ACSBG1Q96GR2 724 aa23.16■■□□□ 1.3
CLN3-263ENST00000637871 KDM6AO15550 1401 aaPredicted RBP23.16■■□□□ 1.3
CLN3-263ENST00000637871 DCTN1Q14203 1278 aa23.15■■□□□ 1.3
CLN3-263ENST00000637871 MPRIPQ6WCQ1 1025 aa23.15■■□□□ 1.3
CLN3-263ENST00000637871 PDZRN3Q9UPQ7 1066 aa23.15■■□□□ 1.3
CLN3-263ENST00000637871 SBF2Q86WG5 1849 aa23.15■■□□□ 1.3
CLN3-263ENST00000637871 SMC5Q8IY18 1101 aa23.15■■□□□ 1.3
CLN3-263ENST00000637871 MAP3K5Q99683 1374 aa23.14■■□□□ 1.3
CLN3-263ENST00000637871 KAT6BQ8WYB5 2073 aa23.14■■□□□ 1.3
CLN3-263ENST00000637871 PTPRCP08575 1304 aa23.14■■□□□ 1.3
CLN3-263ENST00000637871 GNAT3A8MTJ3 354 aa23.13■■□□□ 1.29
CLN3-263ENST00000637871 ZBTB7BO15156 539 aaPredicted RBP23.13■■□□□ 1.29
CLN3-263ENST00000637871 AKAP4Q5JQC9 854 aa23.13■■□□□ 1.29
CLN3-263ENST00000637871 PTF1AQ7RTS3 328 aa23.13■■□□□ 1.29
CLN3-263ENST00000637871 CHMP4AQ9BY43 222 aa23.13■■□□□ 1.29
CLN3-263ENST00000637871 SCN11AQ9UI33 1791 aa23.12■■□□□ 1.29
CLN3-263ENST00000637871 MCM10Q7L590 875 aa23.12■■□□□ 1.29
CLN3-263ENST00000637871 SKAP1Q86WV1 359 aa23.11■■□□□ 1.29
CLN3-263ENST00000637871 LGR6Q9HBX8 967 aa23.11■■□□□ 1.29
CLN3-263ENST00000637871 KCNQ2O43526 872 aa23.11■■□□□ 1.29
CLN3-263ENST00000637871 ITGB4P16144 1822 aa23.1■■□□□ 1.29
CLN3-263ENST00000637871 NHSQ6T4R5 1651 aa23.1■■□□□ 1.29
CLN3-263ENST00000637871 ADAMTS7Q9UKP4 1686 aa23.1■■□□□ 1.29
CLN3-263ENST00000637871 NKX1-1Q15270 411 aaPredicted RBP23.1■■□□□ 1.29
CLN3-263ENST00000637871 SYTL4Q96C24 671 aaPredicted RBP23.1■■□□□ 1.29
CLN3-263ENST00000637871 GCC1Q96CN9 775 aa23.1■■□□□ 1.29
CLN3-263ENST00000637871 ELL2O00472 640 aaPredicted RBP23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms