RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 POLD1P28340 1107 aa18.54■□□□□ 0.56
PNKP-228ENST00000637325 FLAD1Q8NFF5 587 aa18.54■□□□□ 0.56
PNKP-228ENST00000637325 RBM42Q9BTD8 480 aaKnown RBP18.54■□□□□ 0.56
PNKP-228ENST00000637325 UBR3Q6ZT12 1888 aa18.54■□□□□ 0.56
PNKP-228ENST00000637325 PPP2R1AP30153 589 aa18.53■□□□□ 0.56
PNKP-228ENST00000637325 COL23A1Q86Y22 540 aaPredicted RBP18.53■□□□□ 0.56
PNKP-228ENST00000637325 ARXQ96QS3 562 aa18.53■□□□□ 0.56
PNKP-228ENST00000637325 NUDCQ9Y266 331 aa18.53■□□□□ 0.56
PNKP-228ENST00000637325 NFATC2IPQ8NCF5 419 aa18.52■□□□□ 0.56
PNKP-228ENST00000637325 SGIP1Q9BQI5 828 aa18.52■□□□□ 0.56
PNKP-228ENST00000637325 MTHFSDQ2M296 383 aaKnown RBP18.51■□□□□ 0.55
PNKP-228ENST00000637325 LINC00116Q8NCU8 138 aa18.51■□□□□ 0.55
PNKP-228ENST00000637325 COL24A1Q17RW2 1714 aa18.51■□□□□ 0.55
PNKP-228ENST00000637325 PHF14O94880 888 aa18.5■□□□□ 0.55
PNKP-228ENST00000637325 ITPK1Q13572 414 aa18.5■□□□□ 0.55
PNKP-228ENST00000637325 FHDC1Q9C0D6 1143 aaPredicted RBP18.5■□□□□ 0.55
PNKP-228ENST00000637325 RNMTO43148 476 aaKnown RBP18.49■□□□□ 0.55
PNKP-228ENST00000637325 KLHL34Q8N239 644 aa18.49■□□□□ 0.55
PNKP-228ENST00000637325 ZNF831Q5JPB2 1677 aa18.49■□□□□ 0.55
PNKP-228ENST00000637325 GAS2L2Q8NHY3 880 aa18.48■□□□□ 0.55
PNKP-228ENST00000637325 SLC52A2Q9HAB3 445 aa18.48■□□□□ 0.55
PNKP-228ENST00000637325 LGR6Q9HBX8 967 aa18.48■□□□□ 0.55
PNKP-228ENST00000637325 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.47■□□□□ 0.55
PNKP-228ENST00000637325 GNPATO15228 680 aa18.47■□□□□ 0.55
PNKP-228ENST00000637325 PTCD1O75127 700 aaKnown RBP18.47■□□□□ 0.55
PNKP-228ENST00000637325 U2AF1L5P0DN76 240 aaPredicted RBP18.47■□□□□ 0.55
PNKP-228ENST00000637325 U2AF1Q01081 240 aaKnown RBP eCLIP18.47■□□□□ 0.55
PNKP-228ENST00000637325 MSL1Q68DK7 614 aa18.47■□□□□ 0.55
PNKP-228ENST00000637325 SYT17Q9BSW7 474 aa18.47■□□□□ 0.55
PNKP-228ENST00000637325 COL5A3P25940 1745 aaPredicted RBP18.46■□□□□ 0.55
PNKP-228ENST00000637325 MYH14Q7Z406 1995 aaKnown RBP18.46■□□□□ 0.55
PNKP-228ENST00000637325 SSFA2P28290 1259 aa18.46■□□□□ 0.55
PNKP-228ENST00000637325 PRKAR2BP31323 418 aa18.45■□□□□ 0.54
PNKP-228ENST00000637325 DDX10Q13206 875 aaKnown RBP18.45■□□□□ 0.54
PNKP-228ENST00000637325 SMIM5Q71RC9 77 aa18.45■□□□□ 0.54
PNKP-228ENST00000637325 SLC4A9Q96Q91 983 aa18.45■□□□□ 0.54
PNKP-228ENST00000637325 GNAT3A8MTJ3 354 aa18.44■□□□□ 0.54
PNKP-228ENST00000637325 AMIGO3Q86WK7 504 aa18.44■□□□□ 0.54
PNKP-228ENST00000637325 RSPH6AQ9H0K4 717 aa18.44■□□□□ 0.54
PNKP-228ENST00000637325 RTCBQ9Y3I0 505 aaKnown RBP18.44■□□□□ 0.54
PNKP-228ENST00000637325 MAP3K5Q99683 1374 aa18.43■□□□□ 0.54
PNKP-228ENST00000637325 ADAMTS7Q9UKP4 1686 aa18.43■□□□□ 0.54
PNKP-228ENST00000637325 MRC1P22897 1456 aa18.42■□□□□ 0.54
PNKP-228ENST00000637325 TRAPPC3LQ5T215 181 aa18.42■□□□□ 0.54
PNKP-228ENST00000637325 RC3H1Q5TC82 1133 aaKnown RBP18.42■□□□□ 0.54
PNKP-228ENST00000637325 FCHSD2O94868 740 aa18.41■□□□□ 0.54
PNKP-228ENST00000637325 TEFQ10587 303 aa18.41■□□□□ 0.54
PNKP-228ENST00000637325 SLC39A6Q13433 755 aa18.41■□□□□ 0.54
PNKP-228ENST00000637325 PHACTR3Q96KR7 559 aa18.41■□□□□ 0.54
PNKP-228ENST00000637325 CNTNAP4Q9C0A0 1308 aa18.41■□□□□ 0.54
PNKP-228ENST00000637325 ZEB1P37275 1124 aaPredicted RBP18.4■□□□□ 0.54
PNKP-228ENST00000637325 RALBP1Q15311 655 aa18.4■□□□□ 0.54
PNKP-228ENST00000637325 TJP1Q07157 1748 aa18.4■□□□□ 0.54
PNKP-228ENST00000637325 NEFMP07197 916 aa18.39■□□□□ 0.53
PNKP-228ENST00000637325 TTC5Q8N0Z6 440 aa18.39■□□□□ 0.53
PNKP-228ENST00000637325 SIPA1L3O60292 1781 aaPredicted RBP18.39■□□□□ 0.53
PNKP-228ENST00000637325 CHD4Q14839 1912 aa18.39■□□□□ 0.53
PNKP-228ENST00000637325 RPS6KA4O75676 772 aa18.38■□□□□ 0.53
PNKP-228ENST00000637325 ADRA2BP18089 450 aa18.38■□□□□ 0.53
PNKP-228ENST00000637325 CRKLP46109 303 aaKnown RBP18.38■□□□□ 0.53
PNKP-228ENST00000637325 IL17REQ8NFR9 667 aa18.38■□□□□ 0.53
PNKP-228ENST00000637325 RFC4P35249 363 aa18.37■□□□□ 0.53
PNKP-228ENST00000637325 DNAJC10Q8IXB1 793 aa18.37■□□□□ 0.53
PNKP-228ENST00000637325 RTF1Q92541 710 aaKnown RBP18.37■□□□□ 0.53
PNKP-228ENST00000637325 DLG5Q8TDM6 1919 aa18.37■□□□□ 0.53
PNKP-228ENST00000637325 UBR2Q8IWV8 1755 aa18.36■□□□□ 0.53
PNKP-228ENST00000637325 PELP1Q8IZL8 1130 aaKnown RBP18.36■□□□□ 0.53
PNKP-228ENST00000637325 ARHGEF1Q92888 912 aaKnown RBP18.36■□□□□ 0.53
PNKP-228ENST00000637325 CICQ96RK0 1608 aaPredicted RBP18.36■□□□□ 0.53
PNKP-228ENST00000637325 GPR162Q16538 588 aa18.35■□□□□ 0.53
PNKP-228ENST00000637325 C4AP0C0L4 1744 aa18.35■□□□□ 0.53
PNKP-228ENST00000637325 KCPQ6ZWJ8 1503 aa18.34■□□□□ 0.53
PNKP-228ENST00000637325 VSIG10Q8N0Z9 540 aa18.34■□□□□ 0.53
PNKP-228ENST00000637325 NLGN2Q8NFZ4 835 aa18.34■□□□□ 0.53
PNKP-228ENST00000637325 PNNQ9H307 717 aaKnown RBP18.34■□□□□ 0.53
PNKP-228ENST00000637325 YY1P25490 414 aa18.33■□□□□ 0.52
PNKP-228ENST00000637325 NLGN1Q8N2Q7 840 aa18.33■□□□□ 0.52
PNKP-228ENST00000637325 CCDC87Q9NVE4 849 aa18.33■□□□□ 0.52
PNKP-228ENST00000637325 CD2APQ9Y5K6 639 aa18.33■□□□□ 0.52
PNKP-228ENST00000637325 BTBD11A6QL63 1104 aa18.32■□□□□ 0.52
PNKP-228ENST00000637325 MMP10P09238 476 aa18.32■□□□□ 0.52
PNKP-228ENST00000637325 INTS5Q6P9B9 1019 aaKnown RBP18.32■□□□□ 0.52
PNKP-228ENST00000637325 ZNF790Q6PG37 636 aa18.32■□□□□ 0.52
PNKP-228ENST00000637325 CEMIPQ8WUJ3 1361 aa18.31■□□□□ 0.52
PNKP-228ENST00000637325 CYP19A1P11511 503 aaPredicted RBP18.31■□□□□ 0.52
PNKP-228ENST00000637325 MCM10Q7L590 875 aa18.31■□□□□ 0.52
PNKP-228ENST00000637325 MYBBP1AQ9BQG0 1328 aaKnown RBP18.3■□□□□ 0.52
PNKP-228ENST00000637325 MAPK8IP3Q9UPT6 1336 aa18.3■□□□□ 0.52
PNKP-228ENST00000637325 HTATSF1O43719 755 aaKnown RBP18.3■□□□□ 0.52
PNKP-228ENST00000637325 STARD3NLO95772 234 aa18.3■□□□□ 0.52
PNKP-228ENST00000637325 ZPR1O75312 459 aa18.29■□□□□ 0.52
PNKP-228ENST00000637325 GYS1P13807 737 aa18.29■□□□□ 0.52
PNKP-228ENST00000637325 DCTN1Q14203 1278 aa18.29■□□□□ 0.52
PNKP-228ENST00000637325 ZNF496Q96IT1 587 aaPredicted RBP18.29■□□□□ 0.52
PNKP-228ENST00000637325 FMNL2Q96PY5 1086 aa18.29■□□□□ 0.52
PNKP-228ENST00000637325 TEX13AQ9BXU3 409 aaPredicted RBP18.29■□□□□ 0.52
PNKP-228ENST00000637325 HEG1Q9ULI3 1381 aa18.29■□□□□ 0.52
PNKP-228ENST00000637325 SRP68Q9UHB9 627 aaKnown RBP18.28■□□□□ 0.52
PNKP-228ENST00000637325 PARP3Q9Y6F1 533 aa18.28■□□□□ 0.52
PNKP-228ENST00000637325 SOS1Q07889 1333 aaPredicted RBP18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms