RNA–Protein interactions for RNA: ENST00000637212.1

LINC00643-207, long intergenic non-protein coding RNA 643, humanhuman

BASIC

Gene LINC00643, Length 734 nt, Biotype transcribed unitary pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-207ENST00000637212 SEPT12Q8IYM1 358 aa17.31■□□□□ 0.36
LINC00643-207ENST00000637212 RCAN3Q9UKA8 241 aa17.31■□□□□ 0.36
LINC00643-207ENST00000637212 RXRBP28702 533 aa17.3■□□□□ 0.36
LINC00643-207ENST00000637212 CHMP4AQ9BY43 222 aa17.3■□□□□ 0.36
LINC00643-207ENST00000637212 A0A0G2JS52 829 aa17.29■□□□□ 0.36
LINC00643-207ENST00000637212 MYT1Q01538 1121 aa17.29■□□□□ 0.36
LINC00643-207ENST00000637212 VAMP4O75379 141 aa17.28■□□□□ 0.36
LINC00643-207ENST00000637212 TMOD3Q9NYL9 352 aa17.28■□□□□ 0.36
LINC00643-207ENST00000637212 ADAMTS7Q9UKP4 1686 aa17.27■□□□□ 0.36
LINC00643-207ENST00000637212 EIF4A1P60842 406 aaKnown RBP17.27■□□□□ 0.36
LINC00643-207ENST00000637212 TWISTNBQ3B726 338 aaPredicted RBP17.27■□□□□ 0.36
LINC00643-207ENST00000637212 ZNF790Q6PG37 636 aa17.27■□□□□ 0.36
LINC00643-207ENST00000637212 C8orf58Q8NAV2 365 aa17.27■□□□□ 0.36
LINC00643-207ENST00000637212 GLI3P10071 1580 aa17.27■□□□□ 0.35
LINC00643-207ENST00000637212 DLG5Q8TDM6 1919 aa17.27■□□□□ 0.35
LINC00643-207ENST00000637212 HOXB7P09629 217 aa17.26■□□□□ 0.35
LINC00643-207ENST00000637212 PIGBQ92521 554 aa17.26■□□□□ 0.35
LINC00643-207ENST00000637212 BCL9O00512 1426 aa17.26■□□□□ 0.35
LINC00643-207ENST00000637212 MRC1P22897 1456 aa17.25■□□□□ 0.35
LINC00643-207ENST00000637212 PRIM1P49642 420 aaKnown RBP17.25■□□□□ 0.35
LINC00643-207ENST00000637212 RARSP54136 660 aaKnown RBP17.25■□□□□ 0.35
LINC00643-207ENST00000637212 ALDH1L2Q3SY69 923 aa17.25■□□□□ 0.35
LINC00643-207ENST00000637212 TSPYL6Q8N831 410 aa17.25■□□□□ 0.35
LINC00643-207ENST00000637212 KCNQ3O43525 872 aa17.24■□□□□ 0.35
LINC00643-207ENST00000637212 TTC5Q8N0Z6 440 aa17.24■□□□□ 0.35
LINC00643-207ENST00000637212 SUPT16HQ9Y5B9 1047 aaKnown RBP17.24■□□□□ 0.35
LINC00643-207ENST00000637212 LRRC37A3O60309 1634 aa17.24■□□□□ 0.35
LINC00643-207ENST00000637212 BRPF1P55201 1214 aaPredicted RBP17.23■□□□□ 0.35
LINC00643-207ENST00000637212 KRT27Q7Z3Y8 459 aa17.23■□□□□ 0.35
LINC00643-207ENST00000637212 HEG1Q9ULI3 1381 aa17.23■□□□□ 0.35
LINC00643-207ENST00000637212 THSD7AQ9UPZ6 1657 aa17.23■□□□□ 0.35
LINC00643-207ENST00000637212 RNF123Q5XPI4 1314 aa17.22■□□□□ 0.35
LINC00643-207ENST00000637212 ELL2O00472 640 aaPredicted RBP17.22■□□□□ 0.35
LINC00643-207ENST00000637212 SLC39A6Q13433 755 aa17.22■□□□□ 0.35
LINC00643-207ENST00000637212 FMNL2Q96PY5 1086 aa17.22■□□□□ 0.35
LINC00643-207ENST00000637212 GIGYF1O75420 1035 aaPredicted RBP17.21■□□□□ 0.35
LINC00643-207ENST00000637212 KRT24Q2M2I5 525 aa17.21■□□□□ 0.35
LINC00643-207ENST00000637212 FAM196AQ6ZSG2 479 aa17.21■□□□□ 0.35
LINC00643-207ENST00000637212 WNK3Q9BYP7 1800 aa17.2■□□□□ 0.34
LINC00643-207ENST00000637212 SNRPA1P09661 255 aaKnown RBP17.2■□□□□ 0.34
LINC00643-207ENST00000637212 CCDC30Q5VVM6 783 aa17.2■□□□□ 0.34
LINC00643-207ENST00000637212 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.2■□□□□ 0.34
LINC00643-207ENST00000637212 SYTL4Q96C24 671 aaPredicted RBP17.2■□□□□ 0.34
LINC00643-207ENST00000637212 ATG3Q9NT62 314 aa17.2■□□□□ 0.34
LINC00643-207ENST00000637212 SHANK3Q9BYB0 1731 aa17.19■□□□□ 0.34
LINC00643-207ENST00000637212 VSIG10Q8N0Z9 540 aa17.19■□□□□ 0.34
LINC00643-207ENST00000637212 SSH1Q8WYL5 1049 aa17.19■□□□□ 0.34
LINC00643-207ENST00000637212 SMARCC1Q92922 1105 aaPredicted RBP17.19■□□□□ 0.34
LINC00643-207ENST00000637212 ZNF496Q96IT1 587 aaPredicted RBP17.19■□□□□ 0.34
LINC00643-207ENST00000637212 RGS12O14924 1447 aa17.19■□□□□ 0.34
LINC00643-207ENST00000637212 BCAR3O75815 825 aa17.18■□□□□ 0.34
LINC00643-207ENST00000637212 ACSBG1Q96GR2 724 aa17.18■□□□□ 0.34
LINC00643-207ENST00000637212 TEX13AQ9BXU3 409 aaPredicted RBP17.18■□□□□ 0.34
LINC00643-207ENST00000637212 ASAP1Q9ULH1 1129 aa17.18■□□□□ 0.34
LINC00643-207ENST00000637212 SCN11AQ9UI33 1791 aa17.17■□□□□ 0.34
LINC00643-207ENST00000637212 IPO8O15397 1037 aaKnown RBP17.17■□□□□ 0.34
LINC00643-207ENST00000637212 MRPL50Q8N5N7 158 aaKnown RBP17.17■□□□□ 0.34
LINC00643-207ENST00000637212 SMC4Q9NTJ3 1288 aa17.17■□□□□ 0.34
LINC00643-207ENST00000637212 KCNQ2O43526 872 aa17.16■□□□□ 0.34
LINC00643-207ENST00000637212 RRP1P56182 461 aaKnown RBP17.16■□□□□ 0.34
LINC00643-207ENST00000637212 UPF1Q92900 1129 aaKnown RBP eCLIP17.16■□□□□ 0.34
LINC00643-207ENST00000637212 BCL11BQ9C0K0 894 aaPredicted RBP17.16■□□□□ 0.34
LINC00643-207ENST00000637212 HDGFL1Q5TGJ6 251 aa17.15■□□□□ 0.34
LINC00643-207ENST00000637212 ARHGAP45Q92619 1136 aa17.15■□□□□ 0.34
LINC00643-207ENST00000637212 STK31Q9BXU1 1019 aa17.15■□□□□ 0.34
LINC00643-207ENST00000637212 PTCD1O75127 700 aaKnown RBP17.14■□□□□ 0.33
LINC00643-207ENST00000637212 SLC4A2P04920 1241 aa17.14■□□□□ 0.33
LINC00643-207ENST00000637212 MS4A1P11836 297 aa17.13■□□□□ 0.33
LINC00643-207ENST00000637212 EIF2S2P20042 333 aaKnown RBP17.13■□□□□ 0.33
LINC00643-207ENST00000637212 FAM182BQ5T319 152 aa17.13■□□□□ 0.33
LINC00643-207ENST00000637212 DBF4Q9UBU7 674 aaPredicted RBP17.13■□□□□ 0.33
LINC00643-207ENST00000637212 KIF16BQ96L93 1317 aa17.13■□□□□ 0.33
LINC00643-207ENST00000637212 PDE3AQ14432 1141 aa17.12■□□□□ 0.33
LINC00643-207ENST00000637212 ZKSCAN2Q63HK3 967 aa17.12■□□□□ 0.33
LINC00643-207ENST00000637212 RBM42Q9BTD8 480 aaKnown RBP17.12■□□□□ 0.33
LINC00643-207ENST00000637212 BCL2L13Q9BXK5 485 aa17.12■□□□□ 0.33
LINC00643-207ENST00000637212 NOB1Q9ULX3 412 aaKnown RBP17.12■□□□□ 0.33
LINC00643-207ENST00000637212 USP16Q9Y5T5 823 aa17.12■□□□□ 0.33
LINC00643-207ENST00000637212 SIPA1L3O60292 1781 aaPredicted RBP17.12■□□□□ 0.33
LINC00643-207ENST00000637212 STARD3NLO95772 234 aa17.11■□□□□ 0.33
LINC00643-207ENST00000637212 NEFLP07196 543 aa17.11■□□□□ 0.33
LINC00643-207ENST00000637212 ERBB4Q15303 1308 aa17.11■□□□□ 0.33
LINC00643-207ENST00000637212 KDM3BQ7LBC6 1761 aa17.1■□□□□ 0.33
LINC00643-207ENST00000637212 PRAMEF22A3QJZ6 481 aa17.1■□□□□ 0.33
LINC00643-207ENST00000637212 FRAT1Q92837 279 aaPredicted RBP17.1■□□□□ 0.33
LINC00643-207ENST00000637212 DDX21Q9NR30 783 aaKnown RBP eCLIP17.1■□□□□ 0.33
LINC00643-207ENST00000637212 HYPKQ9NX55 129 aa17.1■□□□□ 0.33
LINC00643-207ENST00000637212 LOC102724428A0A0B4J2F2 783 aa17.09■□□□□ 0.33
LINC00643-207ENST00000637212 TCERG1O14776 1098 aaKnown RBP17.09■□□□□ 0.33
LINC00643-207ENST00000637212 PLIN1O60240 522 aa17.09■□□□□ 0.33
LINC00643-207ENST00000637212 HMGB2P26583 209 aaKnown RBP17.09■□□□□ 0.33
LINC00643-207ENST00000637212 CANXP27824 592 aaKnown RBP17.09■□□□□ 0.33
LINC00643-207ENST00000637212 SIK1P57059 783 aa17.09■□□□□ 0.33
LINC00643-207ENST00000637212 ATF7IPQ6VMQ6 1270 aa17.09■□□□□ 0.33
LINC00643-207ENST00000637212 API5Q9BZZ5 524 aaKnown RBP17.09■□□□□ 0.33
LINC00643-207ENST00000637212 PTPRCP08575 1304 aa17.09■□□□□ 0.33
LINC00643-207ENST00000637212 TOGARAM1Q9Y4F4 1720 aa17.08■□□□□ 0.32
LINC00643-207ENST00000637212 KCPQ6ZWJ8 1503 aa17.08■□□□□ 0.32
LINC00643-207ENST00000637212 PALLDQ8WX93 1383 aa17.08■□□□□ 0.32
LINC00643-207ENST00000637212 PDIA6Q15084 440 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms