RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PLSCR1O15162 318 aa4.96□□□□□ -1.62
SCN1A-214ENST00000637038 GLIPR1L2Q4G1C9 344 aa4.96□□□□□ -1.62
SCN1A-214ENST00000637038 CASC1Q6TDU7 716 aa4.96□□□□□ -1.62
SCN1A-214ENST00000637038 TRIM35Q9UPQ4 493 aa4.96□□□□□ -1.62
SCN1A-214ENST00000637038 DIAPH1O60610 1272 aaKnown RBP4.95□□□□□ -1.62
SCN1A-214ENST00000637038 MFAP1P55081 439 aaKnown RBP4.95□□□□□ -1.62
SCN1A-214ENST00000637038 HDAC1Q13547 482 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-214ENST00000637038 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.95□□□□□ -1.62
SCN1A-214ENST00000637038 CIZ1Q9ULV3 898 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-214ENST00000637038 PCDHB15Q9Y5E8 787 aa4.95□□□□□ -1.62
SCN1A-214ENST00000637038 DDX60Q8IY21 1712 aaKnown RBP4.95□□□□□ -1.62
SCN1A-214ENST00000637038 SSH2Q76I76 1423 aa4.95□□□□□ -1.62
SCN1A-214ENST00000637038 PSDA5PKW4 1024 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-214ENST00000637038 ALDH1L2Q3SY69 923 aa4.95□□□□□ -1.62
SCN1A-214ENST00000637038 ATF7IPQ6VMQ6 1270 aa4.95□□□□□ -1.62
SCN1A-214ENST00000637038 KLRG1Q96E93 195 aa4.95□□□□□ -1.62
SCN1A-214ENST00000637038 BRPF3Q9ULD4 1205 aa4.95□□□□□ -1.62
SCN1A-214ENST00000637038 TRIM44Q96DX7 344 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-214ENST00000637038 ATP7BP35670 1465 aa4.95□□□□□ -1.62
SCN1A-214ENST00000637038 JMYQ8N9B5 988 aa4.94□□□□□ -1.62
SCN1A-214ENST00000637038 BCL2L13Q9BXK5 485 aa4.94□□□□□ -1.62
SCN1A-214ENST00000637038 FBXO3Q9UK99 471 aa4.94□□□□□ -1.62
SCN1A-214ENST00000637038 LRP6O75581 1613 aa4.94□□□□□ -1.62
SCN1A-214ENST00000637038 GLI3P10071 1580 aa4.94□□□□□ -1.62
SCN1A-214ENST00000637038 C10orf71Q711Q0 1435 aa4.94□□□□□ -1.62
SCN1A-214ENST00000637038 AMOTL2Q9Y2J4 779 aa4.94□□□□□ -1.62
SCN1A-214ENST00000637038 MRE11P49959 708 aa4.94□□□□□ -1.62
SCN1A-214ENST00000637038 CHD4Q14839 1912 aa4.94□□□□□ -1.62
SCN1A-214ENST00000637038 TMPOP42166 694 aaKnown RBP4.94□□□□□ -1.62
SCN1A-214ENST00000637038 RIPK4P57078 832 aa4.94□□□□□ -1.62
SCN1A-214ENST00000637038 EXOSC9Q06265 439 aaKnown RBP4.94□□□□□ -1.62
SCN1A-214ENST00000637038 KIF2CQ99661 725 aa4.94□□□□□ -1.62
SCN1A-214ENST00000637038 API5Q9BZZ5 524 aaKnown RBP4.94□□□□□ -1.62
SCN1A-214ENST00000637038 RNF39Q9H2S5 420 aa4.94□□□□□ -1.62
SCN1A-214ENST00000637038 LTN1O94822 1766 aa4.93□□□□□ -1.62
SCN1A-214ENST00000637038 LMO7Q8WWI1 1683 aa4.93□□□□□ -1.62
SCN1A-214ENST00000637038 FCHSD2O94868 740 aa4.93□□□□□ -1.62
SCN1A-214ENST00000637038 MCM4P33991 863 aa4.93□□□□□ -1.62
SCN1A-214ENST00000637038 ECE1P42892 770 aa4.93□□□□□ -1.62
SCN1A-214ENST00000637038 GNAI1P63096 354 aa4.93□□□□□ -1.62
SCN1A-214ENST00000637038 BRPF1P55201 1214 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-214ENST00000637038 TMEM132EQ6IEE7 984 aa4.93□□□□□ -1.62
SCN1A-214ENST00000637038 BARGINQ6ZT62 677 aa4.93□□□□□ -1.62
SCN1A-214ENST00000637038 TBC1D2Q9BYX2 928 aa4.93□□□□□ -1.62
SCN1A-214ENST00000637038 CD2APQ9Y5K6 639 aa4.93□□□□□ -1.62
SCN1A-214ENST00000637038 KIF1AQ12756 1690 aa4.93□□□□□ -1.62
SCN1A-214ENST00000637038 COL22A1Q8NFW1 1626 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-214ENST00000637038 CABP2Q9NPB3 220 aa4.92□□□□□ -1.62
SCN1A-214ENST00000637038 STK26Q9P289 416 aa4.92□□□□□ -1.62
SCN1A-214ENST00000637038 CACNB1Q02641 598 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-214ENST00000637038 MAP2K1Q02750 393 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-214ENST00000637038 SIRT1Q96EB6 747 aa4.92□□□□□ -1.62
SCN1A-214ENST00000637038 TRAK2O60296 914 aa4.92□□□□□ -1.62
SCN1A-214ENST00000637038 FBXO31Q5XUX0 539 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-214ENST00000637038 SMC5Q8IY18 1101 aa4.92□□□□□ -1.62
SCN1A-214ENST00000637038 ARHGAP45Q92619 1136 aa4.92□□□□□ -1.62
SCN1A-214ENST00000637038 SNX21Q969T3 373 aa4.92□□□□□ -1.62
SCN1A-214ENST00000637038 SLC26A8Q96RN1 970 aa4.92□□□□□ -1.62
SCN1A-214ENST00000637038 NWD2Q9ULI1 1742 aa4.92□□□□□ -1.62
SCN1A-214ENST00000637038 NOB1Q9ULX3 412 aaKnown RBP4.92□□□□□ -1.62
SCN1A-214ENST00000637038 ATP10DQ9P241 1426 aa4.92□□□□□ -1.62
SCN1A-214ENST00000637038 TRIM27P14373 513 aa4.92□□□□□ -1.62
SCN1A-214ENST00000637038 SAFB2Q14151 953 aaKnown RBP eCLIP4.92□□□□□ -1.62
SCN1A-214ENST00000637038 ANKRD13DQ6ZTN6 518 aa4.92□□□□□ -1.62
SCN1A-214ENST00000637038 MYH15Q9Y2K3 1946 aa4.91□□□□□ -1.62
SCN1A-214ENST00000637038 PRPF38BQ5VTL8 546 aaKnown RBP4.91□□□□□ -1.62
SCN1A-214ENST00000637038 CHD1LQ86WJ1 897 aa4.91□□□□□ -1.62
SCN1A-214ENST00000637038 SSH1Q8WYL5 1049 aa4.91□□□□□ -1.62
SCN1A-214ENST00000637038 TSR2Q969E8 191 aaKnown RBP4.91□□□□□ -1.62
SCN1A-214ENST00000637038 GGNBP2Q9H3C7 697 aa4.91□□□□□ -1.62
SCN1A-214ENST00000637038 CHD2O14647 1828 aaKnown RBP4.91□□□□□ -1.62
SCN1A-214ENST00000637038 MST1RQ04912 1400 aa4.91□□□□□ -1.62
SCN1A-214ENST00000637038 CDC45O75419 566 aa4.91□□□□□ -1.62
SCN1A-214ENST00000637038 EN1Q05925 392 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-214ENST00000637038 BMP2KLQ5H9B9 411 aa4.91□□□□□ -1.62
SCN1A-214ENST00000637038 SLC27A3Q5K4L6 730 aa4.91□□□□□ -1.62
SCN1A-214ENST00000637038 LMOD2Q6P5Q4 547 aa4.91□□□□□ -1.62
SCN1A-214ENST00000637038 DEFB132Q7Z7B7 95 aa4.91□□□□□ -1.62
SCN1A-214ENST00000637038 REM2Q8IYK8 340 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-214ENST00000637038 NUCB1Q02818 461 aa4.91□□□□□ -1.62
SCN1A-214ENST00000637038 SPRYD3Q8NCJ5 442 aa4.91□□□□□ -1.62
SCN1A-214ENST00000637038 OVOS2A0A0G2JMS6 1433 aa4.9□□□□□ -1.62
SCN1A-214ENST00000637038 OVOS2A0A0J9YW53 1432 aa4.9□□□□□ -1.62
SCN1A-214ENST00000637038 OVOS2Q6IE36 1432 aa4.9□□□□□ -1.62
SCN1A-214ENST00000637038 MINK1Q8N4C8 1332 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-214ENST00000637038 FSD2A1L4K1 749 aa4.9□□□□□ -1.62
SCN1A-214ENST00000637038 HMMRO75330 724 aa4.9□□□□□ -1.62
SCN1A-214ENST00000637038 ZNF853P0CG23 659 aa4.9□□□□□ -1.62
SCN1A-214ENST00000637038 NFE2L2Q16236 605 aa4.9□□□□□ -1.62
SCN1A-214ENST00000637038 ANKRD45Q5TZF3 282 aa4.9□□□□□ -1.62
SCN1A-214ENST00000637038 TMEM57Q8N5G2 664 aa4.9□□□□□ -1.62
SCN1A-214ENST00000637038 NAP1L5Q96NT1 182 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-214ENST00000637038 IFT57Q9NWB7 429 aa4.9□□□□□ -1.62
SCN1A-214ENST00000637038 TRPM3Q9HCF6 1732 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-214ENST00000637038 NUCB2P80303 420 aa4.9□□□□□ -1.62
SCN1A-214ENST00000637038 ARHGEF6Q15052 776 aa4.9□□□□□ -1.63
SCN1A-214ENST00000637038 RABEP1Q15276 862 aa4.9□□□□□ -1.63
SCN1A-214ENST00000637038 CAMKK2Q96RR4 588 aa4.9□□□□□ -1.63
SCN1A-214ENST00000637038 LNPKQ9C0E8 428 aa4.9□□□□□ -1.63
SCN1A-214ENST00000637038 GZF1Q9H116 711 aaPredicted RBP4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms