RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	EXOSC9	Q06265	439 aa	Known RBP	13.11	□□□□□ -0.31
CHD2-223	ENST00000636306	LRSAM1	Q6UWE0	723 aa		13.11	□□□□□ -0.31
CHD2-223	ENST00000636306	CREBRF	Q8IUR6	639 aa		13.11	□□□□□ -0.31
CHD2-223	ENST00000636306	PLCD3	Q8N3E9	789 aa		13.11	□□□□□ -0.31
CHD2-223	ENST00000636306	COG6	Q9Y2V7	657 aa		13.11	□□□□□ -0.31
CHD2-223	ENST00000636306	NWD1	Q149M9	1564 aa		13.11	□□□□□ -0.31
CHD2-223	ENST00000636306	NUCB2	P80303	420 aa		13.1	□□□□□ -0.31
CHD2-223	ENST00000636306	SYCP1	Q15431	976 aa		13.1	□□□□□ -0.31
CHD2-223	ENST00000636306	DZIP1L	Q8IYY4	767 aa	Known RBP	13.1	□□□□□ -0.31
CHD2-223	ENST00000636306	TIGD1	Q96MW7	591 aa		13.1	□□□□□ -0.31
CHD2-223	ENST00000636306		K7ELQ4	463 aa	Predicted RBP	13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	SSFA2	P28290	1259 aa		13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	MVP	Q14764	893 aa	Known RBP	13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	TSR2	Q969E8	191 aa	Known RBP	13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	ZFP91	Q96JP5	570 aa	Predicted RBP	13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	BCL2L12	Q9HB09	334 aa		13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	DIAPH3	Q9NSV4	1193 aa		13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	SPTLC3	Q9NUV7	552 aa		13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	ZRANB1	Q9UGI0	708 aa		13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	PCDHB15	Q9Y5E8	787 aa		13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	ADGRL3	Q9HAR2	1447 aa		13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	HMOX1	P09601	288 aa		13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	RRS1	Q15050	365 aa	Known RBP	13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	PANK1	Q8TE04	598 aa		13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	LMBRD1	Q9NUN5	540 aa		13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	DDX19B	Q9UMR2	479 aa		13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	NPHP4	O75161	1426 aa	Predicted RBP	13.09	□□□□□ -0.31
CHD2-223	ENST00000636306	RTL1	A6NKG5	1358 aa		13.08	□□□□□ -0.32
CHD2-223	ENST00000636306	KCNA6	P17658	529 aa		13.08	□□□□□ -0.32
CHD2-223	ENST00000636306	BRD2	P25440	801 aa	Known RBP	13.08	□□□□□ -0.32
CHD2-223	ENST00000636306	KCNJ4	P48050	445 aa		13.08	□□□□□ -0.32
CHD2-223	ENST00000636306	PRIM1	P49642	420 aa	Known RBP	13.08	□□□□□ -0.32
CHD2-223	ENST00000636306	CALCOCO1	Q9P1Z2	691 aa		13.08	□□□□□ -0.32
CHD2-223	ENST00000636306	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	13.08	□□□□□ -0.32
CHD2-223	ENST00000636306	TULP2	O00295	520 aa		13.07	□□□□□ -0.32
CHD2-223	ENST00000636306	PTMA	P06454	111 aa	Known RBP	13.07	□□□□□ -0.32
CHD2-223	ENST00000636306	BRPF1	P55201	1214 aa	Predicted RBP	13.07	□□□□□ -0.32
CHD2-223	ENST00000636306	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.07	□□□□□ -0.32
CHD2-223	ENST00000636306	CAVIN1	Q6NZI2	390 aa	Known RBP	13.07	□□□□□ -0.32
CHD2-223	ENST00000636306	RGS22	Q8NE09	1264 aa		13.07	□□□□□ -0.32
CHD2-223	ENST00000636306	MARF1	Q9Y4F3	1742 aa	Known RBP	13.07	□□□□□ -0.32
CHD2-223	ENST00000636306	FKBP5	Q13451	457 aa	Predicted RBP	13.07	□□□□□ -0.32
CHD2-223	ENST00000636306	EIF4A2	Q14240	407 aa	Known RBP	13.07	□□□□□ -0.32
CHD2-223	ENST00000636306	ATF7IP	Q6VMQ6	1270 aa		13.07	□□□□□ -0.32
CHD2-223	ENST00000636306	YY1AP1	Q9H869	796 aa		13.07	□□□□□ -0.32
CHD2-223	ENST00000636306	KIF1A	Q12756	1690 aa		13.06	□□□□□ -0.32
CHD2-223	ENST00000636306	NUTM2F	A1L443	756 aa		13.06	□□□□□ -0.32
CHD2-223	ENST00000636306	UVSSA	Q2YD98	709 aa		13.06	□□□□□ -0.32
CHD2-223	ENST00000636306	BCL2L13	Q9BXK5	485 aa		13.06	□□□□□ -0.32
CHD2-223	ENST00000636306	CTIF	O43310	598 aa	Known RBP	13.05	□□□□□ -0.32
CHD2-223	ENST00000636306	SLFN14	P0C7P3	912 aa		13.05	□□□□□ -0.32
CHD2-223	ENST00000636306	SSH1	Q8WYL5	1049 aa		13.05	□□□□□ -0.32
CHD2-223	ENST00000636306	SPDYE4	A6NLX3	237 aa		13.04	□□□□□ -0.32
CHD2-223	ENST00000636306	PHACTR3	Q96KR7	559 aa		13.04	□□□□□ -0.32
CHD2-223	ENST00000636306	CFAP44	Q96MT7	982 aa		13.04	□□□□□ -0.32
CHD2-223	ENST00000636306	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.04	□□□□□ -0.32
CHD2-223	ENST00000636306	CYP2E1	P05181	493 aa	Predicted RBP	13.04	□□□□□ -0.32
CHD2-223	ENST00000636306	FBLN1	P23142	703 aa		13.04	□□□□□ -0.32
CHD2-223	ENST00000636306	CHAF1A	Q13111	956 aa	Predicted RBP	13.04	□□□□□ -0.32
CHD2-223	ENST00000636306	HDAC1	Q13547	482 aa	Predicted RBP	13.04	□□□□□ -0.32
CHD2-223	ENST00000636306	ARHGAP45	Q92619	1136 aa		13.04	□□□□□ -0.32
CHD2-223	ENST00000636306	MAP3K19	Q56UN5	1328 aa		13.04	□□□□□ -0.32
CHD2-223	ENST00000636306	LTN1	O94822	1766 aa		13.03	□□□□□ -0.32
CHD2-223	ENST00000636306	MBD3	O95983	291 aa		13.03	□□□□□ -0.32
CHD2-223	ENST00000636306	ZNF853	P0CG23	659 aa		13.03	□□□□□ -0.32
CHD2-223	ENST00000636306	AMPH	P49418	695 aa		13.03	□□□□□ -0.32
CHD2-223	ENST00000636306	MMP14	P50281	582 aa		13.03	□□□□□ -0.32
CHD2-223	ENST00000636306	MCTP1	Q6DN14	999 aa		13.03	□□□□□ -0.32
CHD2-223	ENST00000636306	SULT6B1	Q6IMI4	303 aa		13.03	□□□□□ -0.32
CHD2-223	ENST00000636306	KLHL34	Q8N239	644 aa		13.03	□□□□□ -0.32
CHD2-223	ENST00000636306	KDR	P35968	1356 aa		13.03	□□□□□ -0.32
CHD2-223	ENST00000636306	ZBTB22	O15209	634 aa		13.02	□□□□□ -0.32
CHD2-223	ENST00000636306	TRIM27	P14373	513 aa		13.02	□□□□□ -0.32
CHD2-223	ENST00000636306	U2AF2	P26368	475 aa	Known RBP eCLIP	13.02	□□□□□ -0.32	3e-7	■■■□□ 17.2
CHD2-223	ENST00000636306	EFCC1	Q9HA90	598 aa		13.02	□□□□□ -0.32
CHD2-223	ENST00000636306	CWC22	Q9HCG8	908 aa	Known RBP	13.02	□□□□□ -0.32
CHD2-223	ENST00000636306	PHF8	Q9UPP1	1060 aa		13.02	□□□□□ -0.32
CHD2-223	ENST00000636306	MORC2	Q9Y6X9	1032 aa	Predicted RBP	13.02	□□□□□ -0.32
CHD2-223	ENST00000636306	LRRC37A3	O60309	1634 aa		13.02	□□□□□ -0.33
CHD2-223	ENST00000636306	TPM3	P06753	285 aa		13.02	□□□□□ -0.33
CHD2-223	ENST00000636306	RLBP1	P12271	317 aa		13.02	□□□□□ -0.33
CHD2-223	ENST00000636306	ITPRIP	Q8IWB1	547 aa		13.02	□□□□□ -0.33
CHD2-223	ENST00000636306	SECISBP2L	Q93073	1101 aa	Known RBP	13.02	□□□□□ -0.33
CHD2-223	ENST00000636306	KIF2C	Q99661	725 aa		13.02	□□□□□ -0.33
CHD2-223	ENST00000636306	KIAA0232	Q92628	1395 aa		13.02	□□□□□ -0.33
CHD2-223	ENST00000636306	NLRP6	P59044	892 aa		13.01	□□□□□ -0.33
CHD2-223	ENST00000636306	FAM184A	Q8NB25	1140 aa		13.01	□□□□□ -0.33
CHD2-223	ENST00000636306	GAS2L2	Q8NHY3	880 aa		13.01	□□□□□ -0.33
CHD2-223	ENST00000636306	TSC1	Q92574	1164 aa		13.01	□□□□□ -0.33
CHD2-223	ENST00000636306	NOB1	Q9ULX3	412 aa	Known RBP	13.01	□□□□□ -0.33
CHD2-223	ENST00000636306	IGSF1	Q8N6C5	1336 aa		13.01	□□□□□ -0.33
CHD2-223	ENST00000636306	API5	Q9BZZ5	524 aa	Known RBP	13	□□□□□ -0.33
CHD2-223	ENST00000636306	TSPY26P	Q9H489	355 aa		13	□□□□□ -0.33
CHD2-223	ENST00000636306	MBIP	Q9NS73	344 aa		13	□□□□□ -0.33
CHD2-223	ENST00000636306	DDX41	Q9UJV9	622 aa	Known RBP	13	□□□□□ -0.33
CHD2-223	ENST00000636306	TERF2	Q15554	542 aa		12.99	□□□□□ -0.33
CHD2-223	ENST00000636306	TWISTNB	Q3B726	338 aa	Predicted RBP	12.99	□□□□□ -0.33
CHD2-223	ENST00000636306	CTNNA3	Q9UI47	895 aa		12.99	□□□□□ -0.33
CHD2-223	ENST00000636306	HTATSF1	O43719	755 aa	Known RBP	12.99	□□□□□ -0.33
CHD2-223	ENST00000636306	HSP90AB2P	Q58FF8	381 aa		12.99	□□□□□ -0.33

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