RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 FANCIQ9NVI1 1328 aa19.23■□□□□ 0.67
LIMS3-206ENST00000631420 BTBD11A6QL63 1104 aa19.22■□□□□ 0.67
LIMS3-206ENST00000631420 KCNQ3O43525 872 aa19.22■□□□□ 0.67
LIMS3-206ENST00000631420 ACSBG1Q96GR2 724 aa19.22■□□□□ 0.67
LIMS3-206ENST00000631420 TSPYL4Q9UJ04 414 aa19.22■□□□□ 0.67
LIMS3-206ENST00000631420 ADAMTS7Q9UKP4 1686 aa19.21■□□□□ 0.67
LIMS3-206ENST00000631420 PRIM1P49642 420 aaKnown RBP19.21■□□□□ 0.67
LIMS3-206ENST00000631420 EXOSC9Q06265 439 aaKnown RBP19.19■□□□□ 0.66
LIMS3-206ENST00000631420 SLC39A6Q13433 755 aa19.19■□□□□ 0.66
LIMS3-206ENST00000631420 KRT27Q7Z3Y8 459 aa19.19■□□□□ 0.66
LIMS3-206ENST00000631420 KCNQ2O43526 872 aa19.19■□□□□ 0.66
LIMS3-206ENST00000631420 PIGBQ92521 554 aa19.19■□□□□ 0.66
LIMS3-206ENST00000631420 SYTL4Q96C24 671 aaPredicted RBP19.19■□□□□ 0.66
LIMS3-206ENST00000631420 SCN11AQ9UI33 1791 aa19.18■□□□□ 0.66
LIMS3-206ENST00000631420 CENPBP07199 599 aaPredicted RBP19.18■□□□□ 0.66
LIMS3-206ENST00000631420 KRT24Q2M2I5 525 aa19.18■□□□□ 0.66
LIMS3-206ENST00000631420 BABAM1Q9NWV8 329 aa19.18■□□□□ 0.66
LIMS3-206ENST00000631420 TMOD3Q9NYL9 352 aa19.18■□□□□ 0.66
LIMS3-206ENST00000631420 RGS12O14924 1447 aa19.17■□□□□ 0.66
LIMS3-206ENST00000631420 MRC1P22897 1456 aa19.17■□□□□ 0.66
LIMS3-206ENST00000631420 ELL2O00472 640 aaPredicted RBP19.16■□□□□ 0.66
LIMS3-206ENST00000631420 TSPYL6Q8N831 410 aa19.16■□□□□ 0.66
LIMS3-206ENST00000631420 C8orf58Q8NAV2 365 aa19.16■□□□□ 0.66
LIMS3-206ENST00000631420 TOGARAM1Q9Y4F4 1720 aa19.16■□□□□ 0.66
LIMS3-206ENST00000631420 PTF1AQ7RTS3 328 aa19.15■□□□□ 0.66
LIMS3-206ENST00000631420 EIF4A1P60842 406 aaKnown RBP19.15■□□□□ 0.66
LIMS3-206ENST00000631420 ZNF790Q6PG37 636 aa19.15■□□□□ 0.66
LIMS3-206ENST00000631420 ASAP1Q9ULH1 1129 aa19.14■□□□□ 0.65
LIMS3-206ENST00000631420 BCL9O00512 1426 aa19.14■□□□□ 0.65
LIMS3-206ENST00000631420 VIRMAQ69YN4 1812 aaKnown RBP19.13■□□□□ 0.65
LIMS3-206ENST00000631420 ATG3Q9NT62 314 aa19.13■□□□□ 0.65
LIMS3-206ENST00000631420 BRWD3Q6RI45 1802 aa19.12■□□□□ 0.65
LIMS3-206ENST00000631420 SIPA1L3O60292 1781 aaPredicted RBP19.11■□□□□ 0.65
LIMS3-206ENST00000631420 FAM196AQ6ZSG2 479 aa19.11■□□□□ 0.65
LIMS3-206ENST00000631420 VAMP4O75379 141 aa19.1■□□□□ 0.65
LIMS3-206ENST00000631420 TWISTNBQ3B726 338 aaPredicted RBP19.1■□□□□ 0.65
LIMS3-206ENST00000631420 TTC5Q8N0Z6 440 aa19.1■□□□□ 0.65
LIMS3-206ENST00000631420 ZNF496Q96IT1 587 aaPredicted RBP19.1■□□□□ 0.65
LIMS3-206ENST00000631420 DOT1LQ8TEK3 1739 aa19.1■□□□□ 0.65
LIMS3-206ENST00000631420 PRAMEF22A3QJZ6 481 aa19.09■□□□□ 0.65
LIMS3-206ENST00000631420 PTCD1O75127 700 aaKnown RBP19.09■□□□□ 0.65
LIMS3-206ENST00000631420 KAT6BQ8WYB5 2073 aa19.08■□□□□ 0.64
LIMS3-206ENST00000631420 HEG1Q9ULI3 1381 aa19.07■□□□□ 0.64
LIMS3-206ENST00000631420 KDM3BQ7LBC6 1761 aa19.07■□□□□ 0.64
LIMS3-206ENST00000631420 GIGYF1O75420 1035 aaPredicted RBP19.07■□□□□ 0.64
LIMS3-206ENST00000631420 TRIM37O94972 964 aa19.07■□□□□ 0.64
LIMS3-206ENST00000631420 FMNL2Q96PY5 1086 aa19.07■□□□□ 0.64
LIMS3-206ENST00000631420 RCAN3Q9UKA8 241 aa19.07■□□□□ 0.64
LIMS3-206ENST00000631420 ITGB4P16144 1822 aa19.07■□□□□ 0.64
LIMS3-206ENST00000631420 TCERG1O14776 1098 aaKnown RBP19.06■□□□□ 0.64
LIMS3-206ENST00000631420 RBM42Q9BTD8 480 aaKnown RBP19.06■□□□□ 0.64
LIMS3-206ENST00000631420 BCL11BQ9C0K0 894 aaPredicted RBP19.06■□□□□ 0.64
LIMS3-206ENST00000631420 CT47B1P0C2W7 299 aaPredicted RBP19.05■□□□□ 0.64
LIMS3-206ENST00000631420 RARSP54136 660 aaKnown RBP19.05■□□□□ 0.64
LIMS3-206ENST00000631420 NECTIN2Q92692 538 aa19.05■□□□□ 0.64
LIMS3-206ENST00000631420 SLC4A9Q96Q91 983 aa19.05■□□□□ 0.64
LIMS3-206ENST00000631420 BCAR3O75815 825 aa19.04■□□□□ 0.64
LIMS3-206ENST00000631420 EIF2S2P20042 333 aaKnown RBP19.04■□□□□ 0.64
LIMS3-206ENST00000631420 BCL2L13Q9BXK5 485 aa19.04■□□□□ 0.64
LIMS3-206ENST00000631420 KCPQ6ZWJ8 1503 aa19.03■□□□□ 0.64
LIMS3-206ENST00000631420 SNRPA1P09661 255 aaKnown RBP19.03■□□□□ 0.64
LIMS3-206ENST00000631420 SSH1Q8WYL5 1049 aa19.03■□□□□ 0.64
LIMS3-206ENST00000631420 USP16Q9Y5T5 823 aa19.03■□□□□ 0.64
LIMS3-206ENST00000631420 SUPT16HQ9Y5B9 1047 aaKnown RBP19.02■□□□□ 0.64
LIMS3-206ENST00000631420 SMARCC1Q92922 1105 aaPredicted RBP19.02■□□□□ 0.63
LIMS3-206ENST00000631420 PALLDQ8WX93 1383 aa19.01■□□□□ 0.63
LIMS3-206ENST00000631420 PAPPAQ13219 1627 aa19.01■□□□□ 0.63
LIMS3-206ENST00000631420 EP400Q96L91 3159 aa19.01■□□□□ 0.63
LIMS3-206ENST00000631420 HOXB7P09629 217 aa19.01■□□□□ 0.63
LIMS3-206ENST00000631420 NHSQ6T4R5 1651 aa19■□□□□ 0.63
LIMS3-206ENST00000631420 HDGFL1Q5TGJ6 251 aa19■□□□□ 0.63
LIMS3-206ENST00000631420 DNAJC10Q8IXB1 793 aa19■□□□□ 0.63
LIMS3-206ENST00000631420 LOC102724428A0A0B4J2F2 783 aa18.99■□□□□ 0.63
LIMS3-206ENST00000631420 SIK1P57059 783 aa18.99■□□□□ 0.63
LIMS3-206ENST00000631420 SOS1Q07889 1333 aaPredicted RBP18.99■□□□□ 0.63
LIMS3-206ENST00000631420 ALDH1L2Q3SY69 923 aa18.99■□□□□ 0.63
LIMS3-206ENST00000631420 SBF2Q86WG5 1849 aa18.99■□□□□ 0.63
LIMS3-206ENST00000631420 VSIG10Q8N0Z9 540 aa18.99■□□□□ 0.63
LIMS3-206ENST00000631420 ZNF428Q96B54 188 aa18.99■□□□□ 0.63
LIMS3-206ENST00000631420 KCNQ4P56696 695 aa18.98■□□□□ 0.63
LIMS3-206ENST00000631420 CCDC30Q5VVM6 783 aa18.98■□□□□ 0.63
LIMS3-206ENST00000631420 MRPL50Q8N5N7 158 aaKnown RBP18.98■□□□□ 0.63
LIMS3-206ENST00000631420 SMC4Q9NTJ3 1288 aa18.98■□□□□ 0.63
LIMS3-206ENST00000631420 ATP6V1AP38606 617 aa18.98■□□□□ 0.63
LIMS3-206ENST00000631420 UBR2Q8IWV8 1755 aa18.97■□□□□ 0.63
LIMS3-206ENST00000631420 PLIN1O60240 522 aa18.97■□□□□ 0.63
LIMS3-206ENST00000631420 ANXA1P04083 346 aa18.97■□□□□ 0.63
LIMS3-206ENST00000631420 SLC4A2P04920 1241 aa18.97■□□□□ 0.63
LIMS3-206ENST00000631420 ITPK1Q13572 414 aa18.97■□□□□ 0.63
LIMS3-206ENST00000631420 PIP4K2AP48426 406 aaPredicted RBP18.96■□□□□ 0.63
LIMS3-206ENST00000631420 CHPF2Q9P2E5 772 aa18.96■□□□□ 0.63
LIMS3-206ENST00000631420 BTAF1O14981 1849 aa18.96■□□□□ 0.63
LIMS3-206ENST00000631420 APBA3O96018 575 aa18.95■□□□□ 0.62
LIMS3-206ENST00000631420 A1BGP04217 495 aa18.95■□□□□ 0.62
LIMS3-206ENST00000631420 PDIA6Q15084 440 aa18.95■□□□□ 0.62
LIMS3-206ENST00000631420 PROSER3Q2NL68 480 aa18.95■□□□□ 0.62
LIMS3-206ENST00000631420 CYP19A1P11511 503 aaPredicted RBP18.94■□□□□ 0.62
LIMS3-206ENST00000631420 G2E3Q7L622 706 aa18.94■□□□□ 0.62
LIMS3-206ENST00000631420 FRAT1Q92837 279 aaPredicted RBP18.94■□□□□ 0.62
LIMS3-206ENST00000631420 STK31Q9BXU1 1019 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms