RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 AKAP4Q5JQC9 854 aa24■■□□□ 1.43
CLN3-239ENST00000628023 MSH5O43196 834 aa23.99■■□□□ 1.43
CLN3-239ENST00000628023 MPRIPQ6WCQ1 1025 aa23.99■■□□□ 1.43
CLN3-239ENST00000628023 DCAF5Q96JK2 942 aa23.99■■□□□ 1.43
CLN3-239ENST00000628023 MRS2Q9HD23 443 aa23.99■■□□□ 1.43
CLN3-239ENST00000628023 MAPK8IP3Q9UPT6 1336 aa23.99■■□□□ 1.43
CLN3-239ENST00000628023 MAP3K5Q99683 1374 aa23.99■■□□□ 1.43
CLN3-239ENST00000628023 SMARCC1Q92922 1105 aaPredicted RBP23.98■■□□□ 1.43
CLN3-239ENST00000628023 PHACTR3Q96KR7 559 aa23.98■■□□□ 1.43
CLN3-239ENST00000628023 TOGARAM1Q9Y4F4 1720 aa23.98■■□□□ 1.43
CLN3-239ENST00000628023 KLHL34Q8N239 644 aa23.97■■□□□ 1.43
CLN3-239ENST00000628023 TMOD3Q9NYL9 352 aa23.96■■□□□ 1.43
CLN3-239ENST00000628023 KDM6AO15550 1401 aaPredicted RBP23.95■■□□□ 1.42
CLN3-239ENST00000628023 PALLDQ8WX93 1383 aa23.95■■□□□ 1.42
CLN3-239ENST00000628023 CCDC184Q52MB2 194 aa23.95■■□□□ 1.42
CLN3-239ENST00000628023 DIEXFQ68CQ4 756 aaKnown RBP23.94■■□□□ 1.42
CLN3-239ENST00000628023 FLAD1Q8NFF5 587 aa23.94■■□□□ 1.42
CLN3-239ENST00000628023 GNAT3A8MTJ3 354 aa23.93■■□□□ 1.42
CLN3-239ENST00000628023 ERVV-2B6SEH9 535 aa23.93■■□□□ 1.42
CLN3-239ENST00000628023 CABP4P57796 275 aa23.93■■□□□ 1.42
CLN3-239ENST00000628023 GPR162Q16538 588 aa23.93■■□□□ 1.42
CLN3-239ENST00000628023 ITGB4P16144 1822 aa23.92■■□□□ 1.42
CLN3-239ENST00000628023 CCDC146Q8IYE0 955 aa23.92■■□□□ 1.42
CLN3-239ENST00000628023 PLEKHF1Q96S99 279 aa23.92■■□□□ 1.42
CLN3-239ENST00000628023 ADAMTS8Q9UP79 889 aa23.92■■□□□ 1.42
CLN3-239ENST00000628023 TUBGCP6Q96RT7 1819 aa23.91■■□□□ 1.42
CLN3-239ENST00000628023 COL23A1Q86Y22 540 aaPredicted RBP23.91■■□□□ 1.42
CLN3-239ENST00000628023 RNMTO43148 476 aaKnown RBP23.9■■□□□ 1.42
CLN3-239ENST00000628023 PIGBQ92521 554 aa23.9■■□□□ 1.42
CLN3-239ENST00000628023 RTF1Q92541 710 aaKnown RBP23.9■■□□□ 1.42
CLN3-239ENST00000628023 SCN11AQ9UI33 1791 aa23.89■■□□□ 1.42
CLN3-239ENST00000628023 AK7Q96M32 723 aa23.88■■□□□ 1.41
CLN3-239ENST00000628023 LGR6Q9HBX8 967 aa23.88■■□□□ 1.41
CLN3-239ENST00000628023 COL24A1Q17RW2 1714 aa23.87■■□□□ 1.41
CLN3-239ENST00000628023 C5P01031 1676 aa23.87■■□□□ 1.41
CLN3-239ENST00000628023 NFE2L2Q16236 605 aa23.87■■□□□ 1.41
CLN3-239ENST00000628023 PELP1Q8IZL8 1130 aaKnown RBP23.87■■□□□ 1.41
CLN3-239ENST00000628023 RUNDC1Q96C34 613 aa23.87■■□□□ 1.41
CLN3-239ENST00000628023 VIRMAQ69YN4 1812 aaKnown RBP23.85■■□□□ 1.41
CLN3-239ENST00000628023 CHD4Q14839 1912 aa23.85■■□□□ 1.41
CLN3-239ENST00000628023 TEFQ10587 303 aa23.85■■□□□ 1.41
CLN3-239ENST00000628023 NFATC2IPQ8NCF5 419 aa23.85■■□□□ 1.41
CLN3-239ENST00000628023 SLC52A2Q9HAB3 445 aa23.85■■□□□ 1.41
CLN3-239ENST00000628023 MSL1Q68DK7 614 aa23.84■■□□□ 1.41
CLN3-239ENST00000628023 PNISRQ8TF01 805 aaKnown RBP23.84■■□□□ 1.41
CLN3-239ENST00000628023 MRC1P22897 1456 aa23.83■■□□□ 1.41
CLN3-239ENST00000628023 LOC102724428A0A0B4J2F2 783 aa23.83■■□□□ 1.41
CLN3-239ENST00000628023 SIK1P57059 783 aa23.83■■□□□ 1.41
CLN3-239ENST00000628023 ZNF784Q8NCA9 323 aaPredicted RBP23.83■■□□□ 1.41
CLN3-239ENST00000628023 ASAP1Q9ULH1 1129 aa23.83■■□□□ 1.41
CLN3-239ENST00000628023 ADAMTS7Q9UKP4 1686 aa23.83■■□□□ 1.4
CLN3-239ENST00000628023 TAF1LQ8IZX4 1826 aa23.82■■□□□ 1.4
CLN3-239ENST00000628023 HTATSF1O43719 755 aaKnown RBP23.82■■□□□ 1.4
CLN3-239ENST00000628023 MCM10Q7L590 875 aa23.82■■□□□ 1.4
CLN3-239ENST00000628023 IL17REQ8NFR9 667 aa23.82■■□□□ 1.4
CLN3-239ENST00000628023 TMPOP42166 694 aaKnown RBP23.81■■□□□ 1.4
CLN3-239ENST00000628023 RIPK4P57078 832 aa23.81■■□□□ 1.4
CLN3-239ENST00000628023 RRP7AQ9Y3A4 280 aaKnown RBP23.81■■□□□ 1.4
CLN3-239ENST00000628023 C4BP0C0L5 1744 aa23.8■■□□□ 1.4
CLN3-239ENST00000628023 LMOD3Q0VAK6 560 aa23.8■■□□□ 1.4
CLN3-239ENST00000628023 DCTN1Q14203 1278 aa23.8■■□□□ 1.4
CLN3-239ENST00000628023 NEUROD2Q15784 382 aa23.8■■□□□ 1.4
CLN3-239ENST00000628023 NLGN2Q8NFZ4 835 aa23.8■■□□□ 1.4
CLN3-239ENST00000628023 ATG3Q9NT62 314 aa23.8■■□□□ 1.4
CLN3-239ENST00000628023 DLG5Q8TDM6 1919 aa23.8■■□□□ 1.4
CLN3-239ENST00000628023 PHF14O94880 888 aa23.79■■□□□ 1.4
CLN3-239ENST00000628023 FAM9BQ8IZU0 186 aa23.79■■□□□ 1.4
CLN3-239ENST00000628023 CEMIPQ8WUJ3 1361 aa23.78■■□□□ 1.4
CLN3-239ENST00000628023 GRIN3BO60391 1043 aa23.78■■□□□ 1.4
CLN3-239ENST00000628023 ATP6V1AP38606 617 aa23.78■■□□□ 1.4
CLN3-239ENST00000628023 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.77■■□□□ 1.4
CLN3-239ENST00000628023 CCER2I3L3R5 266 aa23.77■■□□□ 1.4
CLN3-239ENST00000628023 SSFA2P28290 1259 aa23.77■■□□□ 1.4
CLN3-239ENST00000628023 RBM42Q9BTD8 480 aaKnown RBP23.77■■□□□ 1.4
CLN3-239ENST00000628023 CD2APQ9Y5K6 639 aa23.77■■□□□ 1.4
CLN3-239ENST00000628023 UTRNP46939 3433 aa23.77■■□□□ 1.39
CLN3-239ENST00000628023 APAF1O14727 1248 aa23.76■■□□□ 1.39
CLN3-239ENST00000628023 TTC5Q8N0Z6 440 aa23.75■■□□□ 1.39
CLN3-239ENST00000628023 LINC00116Q8NCU8 138 aa23.75■■□□□ 1.39
CLN3-239ENST00000628023 GNPATO15228 680 aa23.74■■□□□ 1.39
CLN3-239ENST00000628023 PTCD1O75127 700 aaKnown RBP23.74■■□□□ 1.39
CLN3-239ENST00000628023 SLC39A6Q13433 755 aa23.74■■□□□ 1.39
CLN3-239ENST00000628023 THUMPD2Q9BTF0 503 aaKnown RBP23.74■■□□□ 1.39
CLN3-239ENST00000628023 BTBD11A6QL63 1104 aa23.73■■□□□ 1.39
CLN3-239ENST00000628023 MIER1Q8N108 512 aa23.73■■□□□ 1.39
CLN3-239ENST00000628023 ITPK1Q13572 414 aa23.72■■□□□ 1.39
CLN3-239ENST00000628023 SIPA1L3O60292 1781 aaPredicted RBP23.72■■□□□ 1.39
CLN3-239ENST00000628023 UBR3Q6ZT12 1888 aa23.72■■□□□ 1.39
CLN3-239ENST00000628023 AMIGO3Q86WK7 504 aa23.7■■□□□ 1.38
CLN3-239ENST00000628023 YBX3P16989 372 aaKnown RBP eCLIP23.69■■□□□ 1.38
CLN3-239ENST00000628023 TAF7Q15545 349 aaPredicted RBP23.69■■□□□ 1.38
CLN3-239ENST00000628023 ZNF790Q6PG37 636 aa23.69■■□□□ 1.38
CLN3-239ENST00000628023 SMIM5Q71RC9 77 aa23.69■■□□□ 1.38
CLN3-239ENST00000628023 RTCBQ9Y3I0 505 aaKnown RBP23.69■■□□□ 1.38
CLN3-239ENST00000628023 SENP3-EIF4A1A0A087X0R7 540 aa23.68■■□□□ 1.38
CLN3-239ENST00000628023 TRAPPC3LQ5T215 181 aa23.67■■□□□ 1.38
CLN3-239ENST00000628023 TRIM35Q9UPQ4 493 aa23.67■■□□□ 1.38
CLN3-239ENST00000628023 KCPQ6ZWJ8 1503 aa23.66■■□□□ 1.38
CLN3-239ENST00000628023 RC3H1Q5TC82 1133 aaKnown RBP23.66■■□□□ 1.38
CLN3-239ENST00000628023 FMNL2Q96PY5 1086 aa23.65■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms