RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 MTFR1LQ9H019 292 aa19.53■□□□□ 0.72
PNKP-221ENST00000627317 PNNQ9H307 717 aaKnown RBP19.53■□□□□ 0.72
PNKP-221ENST00000627317 ASAP1Q9ULH1 1129 aa19.53■□□□□ 0.72
PNKP-221ENST00000627317 COL24A1Q17RW2 1714 aa19.53■□□□□ 0.72
PNKP-221ENST00000627317 TAF1LQ8IZX4 1826 aa19.53■□□□□ 0.72
PNKP-221ENST00000627317 ATG3Q9NT62 314 aa19.52■□□□□ 0.72
PNKP-221ENST00000627317 MRC1P22897 1456 aa19.52■□□□□ 0.72
PNKP-221ENST00000627317 C4BP0C0L5 1744 aa19.51■□□□□ 0.71
PNKP-221ENST00000627317 MAPK8IP3Q9UPT6 1336 aa19.51■□□□□ 0.71
PNKP-221ENST00000627317 ZNF831Q5JPB2 1677 aa19.5■□□□□ 0.71
PNKP-221ENST00000627317 LOC102724428A0A0B4J2F2 783 aa19.5■□□□□ 0.71
PNKP-221ENST00000627317 CCER2I3L3R5 266 aa19.5■□□□□ 0.71
PNKP-221ENST00000627317 SIK1P57059 783 aa19.5■□□□□ 0.71
PNKP-221ENST00000627317 MIER1Q8N108 512 aa19.5■□□□□ 0.71
PNKP-221ENST00000627317 TFCP2L1Q9NZI6 479 aa19.5■□□□□ 0.71
PNKP-221ENST00000627317 C1orf141Q5JVX7 400 aa19.49■□□□□ 0.71
PNKP-221ENST00000627317 AMIGO3Q86WK7 504 aa19.49■□□□□ 0.71
PNKP-221ENST00000627317 ADAMTS8Q9UP79 889 aa19.49■□□□□ 0.71
PNKP-221ENST00000627317 ATF5Q9Y2D1 282 aaPredicted RBP19.49■□□□□ 0.71
PNKP-221ENST00000627317 SCN11AQ9UI33 1791 aa19.48■□□□□ 0.71
PNKP-221ENST00000627317 ITPK1Q13572 414 aa19.48■□□□□ 0.71
PNKP-221ENST00000627317 MTHFSDQ2M296 383 aaKnown RBP19.48■□□□□ 0.71
PNKP-221ENST00000627317 AKAP4Q5JQC9 854 aa19.48■□□□□ 0.71
PNKP-221ENST00000627317 GAS2L2Q8NHY3 880 aa19.48■□□□□ 0.71
PNKP-221ENST00000627317 SLC4A9Q96Q91 983 aa19.48■□□□□ 0.71
PNKP-221ENST00000627317 LINC00116Q8NCU8 138 aa19.47■□□□□ 0.71
PNKP-221ENST00000627317 PNISRQ8TF01 805 aaKnown RBP19.47■□□□□ 0.71
PNKP-221ENST00000627317 SLC16A10Q8TF71 515 aa19.47■□□□□ 0.71
PNKP-221ENST00000627317 PHACTR3Q96KR7 559 aa19.47■□□□□ 0.71
PNKP-221ENST00000627317 CICQ96RK0 1608 aaPredicted RBP19.47■□□□□ 0.71
PNKP-221ENST00000627317 COL23A1Q86Y22 540 aaPredicted RBP19.46■□□□□ 0.71
PNKP-221ENST00000627317 CCDC146Q8IYE0 955 aa19.46■□□□□ 0.71
PNKP-221ENST00000627317 CABP4P57796 275 aa19.45■□□□□ 0.7
PNKP-221ENST00000627317 PLEKHF1Q96S99 279 aa19.45■□□□□ 0.7
PNKP-221ENST00000627317 UBR3Q6ZT12 1888 aa19.44■□□□□ 0.7
PNKP-221ENST00000627317 HMGB2P26583 209 aaKnown RBP19.44■□□□□ 0.7
PNKP-221ENST00000627317 PPP1R1BQ9UD71 204 aaPredicted RBP19.44■□□□□ 0.7
PNKP-221ENST00000627317 MAP3K5Q99683 1374 aa19.44■□□□□ 0.7
PNKP-221ENST00000627317 FAM9BQ8IZU0 186 aa19.43■□□□□ 0.7
PNKP-221ENST00000627317 NFATC2IPQ8NCF5 419 aa19.43■□□□□ 0.7
PNKP-221ENST00000627317 RUNDC1Q96C34 613 aa19.43■□□□□ 0.7
PNKP-221ENST00000627317 LGR6Q9HBX8 967 aa19.43■□□□□ 0.7
PNKP-221ENST00000627317 COL5A3P25940 1745 aaPredicted RBP19.42■□□□□ 0.7
PNKP-221ENST00000627317 RNMTO43148 476 aaKnown RBP19.42■□□□□ 0.7
PNKP-221ENST00000627317 SLC52A2Q9HAB3 445 aa19.42■□□□□ 0.7
PNKP-221ENST00000627317 ATP6V1AP38606 617 aa19.41■□□□□ 0.7
PNKP-221ENST00000627317 NFE2L2Q16236 605 aa19.41■□□□□ 0.7
PNKP-221ENST00000627317 KCPQ6ZWJ8 1503 aa19.41■□□□□ 0.7
PNKP-221ENST00000627317 TJP1Q07157 1748 aa19.4■□□□□ 0.7
PNKP-221ENST00000627317 GNAT3A8MTJ3 354 aa19.4■□□□□ 0.7
PNKP-221ENST00000627317 AK7Q96M32 723 aa19.4■□□□□ 0.7
PNKP-221ENST00000627317 SSFA2P28290 1259 aa19.39■□□□□ 0.69
PNKP-221ENST00000627317 SMIM5Q71RC9 77 aa19.39■□□□□ 0.69
PNKP-221ENST00000627317 FLAD1Q8NFF5 587 aa19.39■□□□□ 0.69
PNKP-221ENST00000627317 ARXQ96QS3 562 aa19.39■□□□□ 0.69
PNKP-221ENST00000627317 FHDC1Q9C0D6 1143 aaPredicted RBP19.39■□□□□ 0.69
PNKP-221ENST00000627317 CEMIPQ8WUJ3 1361 aa19.38■□□□□ 0.69
PNKP-221ENST00000627317 RTF1Q92541 710 aaKnown RBP19.38■□□□□ 0.69
PNKP-221ENST00000627317 CNTNAP4Q9C0A0 1308 aa19.38■□□□□ 0.69
PNKP-221ENST00000627317 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.37■□□□□ 0.69
PNKP-221ENST00000627317 SYT17Q9BSW7 474 aa19.37■□□□□ 0.69
PNKP-221ENST00000627317 DLG5Q8TDM6 1919 aa19.36■□□□□ 0.69
PNKP-221ENST00000627317 GNPATO15228 680 aa19.36■□□□□ 0.69
PNKP-221ENST00000627317 TMPOP42166 694 aaKnown RBP19.36■□□□□ 0.69
PNKP-221ENST00000627317 IL17REQ8NFR9 667 aa19.36■□□□□ 0.69
PNKP-221ENST00000627317 RBM42Q9BTD8 480 aaKnown RBP19.36■□□□□ 0.69
PNKP-221ENST00000627317 RRP7AQ9Y3A4 280 aaKnown RBP19.36■□□□□ 0.69
PNKP-221ENST00000627317 UBR2Q8IWV8 1755 aa19.36■□□□□ 0.69
PNKP-221ENST00000627317 VIRMAQ69YN4 1812 aaKnown RBP19.35■□□□□ 0.69
PNKP-221ENST00000627317 SIPA1L3O60292 1781 aaPredicted RBP19.35■□□□□ 0.69
PNKP-221ENST00000627317 UTRNP46939 3433 aa19.35■□□□□ 0.69
PNKP-221ENST00000627317 APAF1O14727 1248 aa19.35■□□□□ 0.69
PNKP-221ENST00000627317 PTCD1O75127 700 aaKnown RBP19.35■□□□□ 0.69
PNKP-221ENST00000627317 LMOD3Q0VAK6 560 aa19.35■□□□□ 0.69
PNKP-221ENST00000627317 RC3H1Q5TC82 1133 aaKnown RBP19.35■□□□□ 0.69
PNKP-221ENST00000627317 HTATSF1O43719 755 aaKnown RBP19.34■□□□□ 0.69
PNKP-221ENST00000627317 PHF14O94880 888 aa19.34■□□□□ 0.69
PNKP-221ENST00000627317 POLD1P28340 1107 aa19.34■□□□□ 0.69
PNKP-221ENST00000627317 RIPK4P57078 832 aa19.34■□□□□ 0.69
PNKP-221ENST00000627317 NEUROD2Q15784 382 aa19.34■□□□□ 0.69
PNKP-221ENST00000627317 MSL1Q68DK7 614 aa19.34■□□□□ 0.69
PNKP-221ENST00000627317 MSH5O43196 834 aa19.33■□□□□ 0.68
PNKP-221ENST00000627317 GOLGB1Q14789 3259 aaKnown RBP19.32■□□□□ 0.68
PNKP-221ENST00000627317 TEFQ10587 303 aa19.32■□□□□ 0.68
PNKP-221ENST00000627317 SLC39A6Q13433 755 aa19.32■□□□□ 0.68
PNKP-221ENST00000627317 MCM10Q7L590 875 aa19.32■□□□□ 0.68
PNKP-221ENST00000627317 MYH14Q7Z406 1995 aaKnown RBP19.32■□□□□ 0.68
PNKP-221ENST00000627317 CRKLP46109 303 aaKnown RBP19.31■□□□□ 0.68
PNKP-221ENST00000627317 DCTN1Q14203 1278 aa19.31■□□□□ 0.68
PNKP-221ENST00000627317 RPS6KA4O75676 772 aa19.3■□□□□ 0.68
PNKP-221ENST00000627317 ADRA2BP18089 450 aa19.3■□□□□ 0.68
PNKP-221ENST00000627317 C4AP0C0L4 1744 aa19.3■□□□□ 0.68
PNKP-221ENST00000627317 INTS5Q6P9B9 1019 aaKnown RBP19.29■□□□□ 0.68
PNKP-221ENST00000627317 RTCBQ9Y3I0 505 aaKnown RBP19.29■□□□□ 0.68
PNKP-221ENST00000627317 SENP3-EIF4A1A0A087X0R7 540 aa19.28■□□□□ 0.68
PNKP-221ENST00000627317 DNAJC10Q8IXB1 793 aa19.28■□□□□ 0.68
PNKP-221ENST00000627317 VSIG10Q8N0Z9 540 aa19.28■□□□□ 0.68
PNKP-221ENST00000627317 CYP19A1P11511 503 aaPredicted RBP19.27■□□□□ 0.68
PNKP-221ENST00000627317 ARHGEF1Q92888 912 aaKnown RBP19.27■□□□□ 0.68
PNKP-221ENST00000627317 THUMPD2Q9BTF0 503 aaKnown RBP19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms