RNA–Protein interactions for RNA: ENST00000623478.1

PCDHB4-202, Transcript of protocadherin beta 4, humanhuman

TSL 1 (best)

Gene PCDHB4, Length 1,206 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB4-202ENST00000623478 FHDC1Q9C0D6 1143 aaPredicted RBP28.19■■■□□ 2.1
PCDHB4-202ENST00000623478 SCN11AQ9UI33 1791 aa28.19■■■□□ 2.1
PCDHB4-202ENST00000623478 ATP6V1AP38606 617 aa28.18■■■□□ 2.1
PCDHB4-202ENST00000623478 MTHFSDQ2M296 383 aaKnown RBP28.18■■■□□ 2.1
PCDHB4-202ENST00000623478 AKAP4Q5JQC9 854 aa28.18■■■□□ 2.1
PCDHB4-202ENST00000623478 ARXQ96QS3 562 aa28.18■■■□□ 2.1
PCDHB4-202ENST00000623478 SMIM5Q71RC9 77 aa28.17■■■□□ 2.1
PCDHB4-202ENST00000623478 HMGB2P26583 209 aaKnown RBP28.16■■■□□ 2.1
PCDHB4-202ENST00000623478 NFATC2IPQ8NCF5 419 aa28.16■■■□□ 2.1
PCDHB4-202ENST00000623478 CFAP53Q96M91 514 aa28.16■■■□□ 2.1
PCDHB4-202ENST00000623478 SLC4A9Q96Q91 983 aa28.16■■■□□ 2.1
PCDHB4-202ENST00000623478 UBR3Q6ZT12 1888 aa28.16■■■□□ 2.1
PCDHB4-202ENST00000623478 RBM42Q9BTD8 480 aaKnown RBP28.15■■■□□ 2.1
PCDHB4-202ENST00000623478 LGR6Q9HBX8 967 aa28.14■■■□□ 2.1
PCDHB4-202ENST00000623478 PHF14O94880 888 aa28.13■■■□□ 2.09
PCDHB4-202ENST00000623478 POLD1P28340 1107 aa28.13■■■□□ 2.09
PCDHB4-202ENST00000623478 MSL1Q68DK7 614 aa28.13■■■□□ 2.09
PCDHB4-202ENST00000623478 SYT17Q9BSW7 474 aa28.13■■■□□ 2.09
PCDHB4-202ENST00000623478 ZNF831Q5JPB2 1677 aa28.12■■■□□ 2.09
PCDHB4-202ENST00000623478 MRC1P22897 1456 aa28.11■■■□□ 2.09
PCDHB4-202ENST00000623478 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.11■■■□□ 2.09
PCDHB4-202ENST00000623478 FLAD1Q8NFF5 587 aa28.11■■■□□ 2.09
PCDHB4-202ENST00000623478 VIRMAQ69YN4 1812 aaKnown RBP28.11■■■□□ 2.09
PCDHB4-202ENST00000623478 ADAMTS7Q9UKP4 1686 aa28.1■■■□□ 2.09
PCDHB4-202ENST00000623478 GNPATO15228 680 aa28.1■■■□□ 2.09
PCDHB4-202ENST00000623478 RNMTO43148 476 aaKnown RBP28.1■■■□□ 2.09
PCDHB4-202ENST00000623478 UTRNP46939 3433 aa28.09■■■□□ 2.09
PCDHB4-202ENST00000623478 COL5A3P25940 1745 aaPredicted RBP28.09■■■□□ 2.09
PCDHB4-202ENST00000623478 PTCD1O75127 700 aaKnown RBP28.09■■■□□ 2.09
PCDHB4-202ENST00000623478 SLC52A2Q9HAB3 445 aa28.09■■■□□ 2.09
PCDHB4-202ENST00000623478 KLHL34Q8N239 644 aa28.08■■■□□ 2.09
PCDHB4-202ENST00000623478 MAP3K5Q99683 1374 aa28.08■■■□□ 2.09
PCDHB4-202ENST00000623478 SSFA2P28290 1259 aa28.07■■■□□ 2.08
PCDHB4-202ENST00000623478 RSPH6AQ9H0K4 717 aa28.07■■■□□ 2.08
PCDHB4-202ENST00000623478 PRKAR2BP31323 418 aa28.06■■■□□ 2.08
PCDHB4-202ENST00000623478 GOLGB1Q14789 3259 aaKnown RBP28.05■■■□□ 2.08
PCDHB4-202ENST00000623478 PHACTR3Q96KR7 559 aa28.05■■■□□ 2.08
PCDHB4-202ENST00000623478 NUDCQ9Y266 331 aa28.05■■■□□ 2.08
PCDHB4-202ENST00000623478 TJP1Q07157 1748 aa28.04■■■□□ 2.08
PCDHB4-202ENST00000623478 U2AF1L5P0DN76 240 aaPredicted RBP28.04■■■□□ 2.08
PCDHB4-202ENST00000623478 U2AF1Q01081 240 aaKnown RBP eCLIP28.04■■■□□ 2.08
PCDHB4-202ENST00000623478 GAS2L2Q8NHY3 880 aa28.04■■■□□ 2.08
PCDHB4-202ENST00000623478 CNTNAP4Q9C0A0 1308 aa28.02■■■□□ 2.08
PCDHB4-202ENST00000623478 SLC39A6Q13433 755 aa28.02■■■□□ 2.08
PCDHB4-202ENST00000623478 CICQ96RK0 1608 aaPredicted RBP28.01■■■□□ 2.07
PCDHB4-202ENST00000623478 DCAF8L1A6NGE4 600 aa28.01■■■□□ 2.07
PCDHB4-202ENST00000623478 GNAT3A8MTJ3 354 aa28■■■□□ 2.07
PCDHB4-202ENST00000623478 DDX10Q13206 875 aaKnown RBP28■■■□□ 2.07
PCDHB4-202ENST00000623478 RTCBQ9Y3I0 505 aaKnown RBP28■■■□□ 2.07
PCDHB4-202ENST00000623478 MYH14Q7Z406 1995 aaKnown RBP27.99■■■□□ 2.07
PCDHB4-202ENST00000623478 KCPQ6ZWJ8 1503 aa27.99■■■□□ 2.07
PCDHB4-202ENST00000623478 RC3H1Q5TC82 1133 aaKnown RBP27.99■■■□□ 2.07
PCDHB4-202ENST00000623478 IL17REQ8NFR9 667 aa27.99■■■□□ 2.07
PCDHB4-202ENST00000623478 NLGN2Q8NFZ4 835 aa27.98■■■□□ 2.07
PCDHB4-202ENST00000623478 FCHSD2O94868 740 aa27.96■■■□□ 2.07
PCDHB4-202ENST00000623478 CRKLP46109 303 aaKnown RBP27.96■■■□□ 2.07
PCDHB4-202ENST00000623478 TRAPPC3LQ5T215 181 aa27.96■■■□□ 2.07
PCDHB4-202ENST00000623478 RPS6KA4O75676 772 aa27.95■■■□□ 2.06
PCDHB4-202ENST00000623478 DNAJC10Q8IXB1 793 aa27.95■■■□□ 2.06
PCDHB4-202ENST00000623478 UBR2Q8IWV8 1755 aa27.95■■■□□ 2.06
PCDHB4-202ENST00000623478 SIPA1L3O60292 1781 aaPredicted RBP27.94■■■□□ 2.06
PCDHB4-202ENST00000623478 ARHGEF1Q92888 912 aaKnown RBP27.94■■■□□ 2.06
PCDHB4-202ENST00000623478 C4AP0C0L4 1744 aa27.94■■■□□ 2.06
PCDHB4-202ENST00000623478 TEFQ10587 303 aa27.93■■■□□ 2.06
PCDHB4-202ENST00000623478 CEMIPQ8WUJ3 1361 aa27.92■■■□□ 2.06
PCDHB4-202ENST00000623478 ADRA2BP18089 450 aa27.92■■■□□ 2.06
PCDHB4-202ENST00000623478 INTS5Q6P9B9 1019 aaKnown RBP27.91■■■□□ 2.06
PCDHB4-202ENST00000623478 RFC4P35249 363 aa27.89■■■□□ 2.06
PCDHB4-202ENST00000623478 RALBP1Q15311 655 aa27.89■■■□□ 2.06
PCDHB4-202ENST00000623478 CYP19A1P11511 503 aaPredicted RBP27.88■■■□□ 2.05
PCDHB4-202ENST00000623478 TTC5Q8N0Z6 440 aa27.88■■■□□ 2.05
PCDHB4-202ENST00000623478 CCDC87Q9NVE4 849 aa27.88■■■□□ 2.05
PCDHB4-202ENST00000623478 MMP10P09238 476 aa27.87■■■□□ 2.05
PCDHB4-202ENST00000623478 YY1P25490 414 aa27.87■■■□□ 2.05
PCDHB4-202ENST00000623478 MCM10Q7L590 875 aa27.87■■■□□ 2.05
PCDHB4-202ENST00000623478 CD2APQ9Y5K6 639 aa27.87■■■□□ 2.05
PCDHB4-202ENST00000623478 GYS1P13807 737 aa27.86■■■□□ 2.05
PCDHB4-202ENST00000623478 GPR162Q16538 588 aa27.86■■■□□ 2.05
PCDHB4-202ENST00000623478 ZNF790Q6PG37 636 aa27.86■■■□□ 2.05
PCDHB4-202ENST00000623478 PELP1Q8IZL8 1130 aaKnown RBP27.86■■■□□ 2.05
PCDHB4-202ENST00000623478 VSIG10Q8N0Z9 540 aa27.86■■■□□ 2.05
PCDHB4-202ENST00000623478 ZNF496Q96IT1 587 aaPredicted RBP27.86■■■□□ 2.05
PCDHB4-202ENST00000623478 SRP68Q9UHB9 627 aaKnown RBP27.85■■■□□ 2.05
PCDHB4-202ENST00000623478 DCTN1Q14203 1278 aa27.84■■■□□ 2.05
PCDHB4-202ENST00000623478 NLGN1Q8N2Q7 840 aa27.84■■■□□ 2.05
PCDHB4-202ENST00000623478 RTF1Q92541 710 aaKnown RBP27.84■■■□□ 2.05
PCDHB4-202ENST00000623478 ZBTB1Q9Y2K1 713 aa27.83■■■□□ 2.05
PCDHB4-202ENST00000623478 SOS1Q07889 1333 aaPredicted RBP27.83■■■□□ 2.05
PCDHB4-202ENST00000623478 BTBD11A6QL63 1104 aa27.82■■■□□ 2.04
PCDHB4-202ENST00000623478 KCNQ3O43525 872 aa27.82■■■□□ 2.04
PCDHB4-202ENST00000623478 PLEKHF1Q96S99 279 aa27.82■■■□□ 2.04
PCDHB4-202ENST00000623478 USP42Q9H9J4 1324 aaKnown RBP27.82■■■□□ 2.04
PCDHB4-202ENST00000623478 HEG1Q9ULI3 1381 aa27.82■■■□□ 2.04
PCDHB4-202ENST00000623478 MYBBP1AQ9BQG0 1328 aaKnown RBP27.81■■■□□ 2.04
PCDHB4-202ENST00000623478 YBX3P16989 372 aaKnown RBP eCLIP27.8■■■□□ 2.04
PCDHB4-202ENST00000623478 COL15A1P39059 1388 aa27.78■■■□□ 2.04
PCDHB4-202ENST00000623478 NEFMP07197 916 aa27.78■■■□□ 2.04
PCDHB4-202ENST00000623478 ZEB1P37275 1124 aaPredicted RBP27.78■■■□□ 2.04
PCDHB4-202ENST00000623478 FKBP8Q14318 412 aa27.78■■■□□ 2.04
PCDHB4-202ENST00000623478 FMNL2Q96PY5 1086 aa27.78■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms