RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 FKBP4Q02790 459 aaKnown RBP eCLIP11.12□□□□□ -0.63
HDAC9-229ENST00000622668 TRDNQ13061 729 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 ARHGEF25Q86VW2 580 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 DNAJC10Q8IXB1 793 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 PI4KAP1Q8N8J0 262 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 DNAAF4Q8WXU2 420 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 LNPKQ9C0E8 428 aa11.12□□□□□ -0.63
HDAC9-229ENST00000622668 CDK11BP21127 795 aaKnown RBP11.11□□□□□ -0.63
HDAC9-229ENST00000622668 CAVIN4Q5BKX8 364 aa11.11□□□□□ -0.63
HDAC9-229ENST00000622668 KDM5CP41229 1560 aa11.11□□□□□ -0.63
HDAC9-229ENST00000622668 PSDA5PKW4 1024 aaPredicted RBP11.11□□□□□ -0.63
HDAC9-229ENST00000622668 RNMTO43148 476 aaKnown RBP11.11□□□□□ -0.63
HDAC9-229ENST00000622668 IFIT1P09914 478 aaKnown RBP11.11□□□□□ -0.63
HDAC9-229ENST00000622668 CNBD1Q8NA66 436 aa11.11□□□□□ -0.63
HDAC9-229ENST00000622668 LRP2BPQ9P2M1 347 aa11.11□□□□□ -0.63
HDAC9-229ENST00000622668 CWC25Q9NXE8 425 aaPredicted RBP11.11□□□□□ -0.63
HDAC9-229ENST00000622668 NSFL1CQ9UNZ2 370 aaKnown RBP11.11□□□□□ -0.63
HDAC9-229ENST00000622668 GLI2P10070 1586 aa11.11□□□□□ -0.63
HDAC9-229ENST00000622668 ANKRD18BA2A2Z9 1011 aa11.1□□□□□ -0.63
HDAC9-229ENST00000622668 BCAR3O75815 825 aa11.1□□□□□ -0.63
HDAC9-229ENST00000622668 MAP3K2Q9Y2U5 619 aa11.1□□□□□ -0.63
HDAC9-229ENST00000622668 CAMSAP1Q5T5Y3 1602 aa11.1□□□□□ -0.63
HDAC9-229ENST00000622668 SPATA31A6Q5VVP1 1343 aa11.1□□□□□ -0.63
HDAC9-229ENST00000622668 WDHD1O75717 1129 aaPredicted RBP11.1□□□□□ -0.63
HDAC9-229ENST00000622668 MFAP1P55081 439 aaKnown RBP11.1□□□□□ -0.63
HDAC9-229ENST00000622668 RRP1P56182 461 aaKnown RBP11.1□□□□□ -0.63
HDAC9-229ENST00000622668 LDHAL6AQ6ZMR3 332 aa11.1□□□□□ -0.63
HDAC9-229ENST00000622668 SYNE3Q6ZMZ3 975 aa11.1□□□□□ -0.63
HDAC9-229ENST00000622668 FSD1Q9BTV5 496 aa11.1□□□□□ -0.63
HDAC9-229ENST00000622668 SETD1BQ9UPS6 1966 aaKnown RBP11.1□□□□□ -0.63
HDAC9-229ENST00000622668 FAM161AQ3B820 660 aa11.1□□□□□ -0.63
HDAC9-229ENST00000622668 EXOC6Q8TAG9 804 aa11.1□□□□□ -0.63
HDAC9-229ENST00000622668 CHPF2Q9P2E5 772 aa11.1□□□□□ -0.63
HDAC9-229ENST00000622668 CDC42BPAQ5VT25 1732 aa11.1□□□□□ -0.63
HDAC9-229ENST00000622668 RIMS1Q86UR5 1692 aaKnown RBP11.1□□□□□ -0.63
HDAC9-229ENST00000622668 WDR17Q8IZU2 1322 aa11.1□□□□□ -0.63
HDAC9-229ENST00000622668 FLIIQ13045 1269 aa11.09□□□□□ -0.63
HDAC9-229ENST00000622668 STK11IPQ8N1F8 1099 aa11.09□□□□□ -0.63
HDAC9-229ENST00000622668 PHACTR3Q96KR7 559 aa11.09□□□□□ -0.63
HDAC9-229ENST00000622668 RUFY2Q8WXA3 655 aa11.09□□□□□ -0.63
HDAC9-229ENST00000622668 LGR6Q9HBX8 967 aa11.09□□□□□ -0.63
HDAC9-229ENST00000622668 AKAP17AQ02040 695 aaKnown RBP11.09□□□□□ -0.63
HDAC9-229ENST00000622668 RBM26Q5T8P6 1007 aaKnown RBP11.09□□□□□ -0.63
HDAC9-229ENST00000622668 DIP2CQ9Y2E4 1556 aa11.08□□□□□ -0.64
HDAC9-229ENST00000622668 ZNF790Q6PG37 636 aa11.08□□□□□ -0.64
HDAC9-229ENST00000622668 CCDC87Q9NVE4 849 aa11.08□□□□□ -0.64
HDAC9-229ENST00000622668 A1BGP04217 495 aa11.08□□□□□ -0.64
HDAC9-229ENST00000622668 EN1Q05925 392 aaPredicted RBP11.08□□□□□ -0.64
HDAC9-229ENST00000622668 ATF7IPQ6VMQ6 1270 aa11.08□□□□□ -0.64
HDAC9-229ENST00000622668 FLAD1Q8NFF5 587 aa11.08□□□□□ -0.64
HDAC9-229ENST00000622668 ZC3H12CQ9C0D7 883 aaKnown RBP11.08□□□□□ -0.64
HDAC9-229ENST00000622668 NYXQ9GZU5 481 aa11.08□□□□□ -0.64
HDAC9-229ENST00000622668 ARHGEF40Q8TER5 1519 aa11.08□□□□□ -0.64
HDAC9-229ENST00000622668 IDH1O75874 414 aaKnown RBP11.08□□□□□ -0.64
HDAC9-229ENST00000622668 MBIPQ9NS73 344 aa11.08□□□□□ -0.64
HDAC9-229ENST00000622668 ERC1Q8IUD2 1116 aa11.07□□□□□ -0.64
HDAC9-229ENST00000622668 UTP14AQ9BVJ6 771 aaKnown RBP11.07□□□□□ -0.64
HDAC9-229ENST00000622668 GJA3Q9Y6H8 435 aa11.07□□□□□ -0.64
HDAC9-229ENST00000622668 GOLGA6L4A6NEF3 574 aa11.07□□□□□ -0.64
HDAC9-229ENST00000622668 CCDC152Q4G0S7 254 aa11.07□□□□□ -0.64
HDAC9-229ENST00000622668 H0YIN7 160 aa11.07□□□□□ -0.64
HDAC9-229ENST00000622668 OGFOD1Q8N543 542 aa11.07□□□□□ -0.64
HDAC9-229ENST00000622668 TCEAL9Q9UHQ7 104 aa11.07□□□□□ -0.64
HDAC9-229ENST00000622668 MAP3K5Q99683 1374 aa11.07□□□□□ -0.64
HDAC9-229ENST00000622668 ANKRD18AQ8IVF6 992 aa11.06□□□□□ -0.64
HDAC9-229ENST00000622668 IL1RAPL2Q9NP60 686 aa11.06□□□□□ -0.64
HDAC9-229ENST00000622668 LOC102724428A0A0B4J2F2 783 aa11.06□□□□□ -0.64
HDAC9-229ENST00000622668 ZBTB7AO95365 584 aa11.06□□□□□ -0.64
HDAC9-229ENST00000622668 SIK1P57059 783 aa11.06□□□□□ -0.64
HDAC9-229ENST00000622668 RRP12Q5JTH9 1297 aaKnown RBP11.06□□□□□ -0.64
HDAC9-229ENST00000622668 EIF2AK4Q9P2K8 1649 aaKnown RBP11.06□□□□□ -0.64
HDAC9-229ENST00000622668 SPRYD3Q8NCJ5 442 aa11.06□□□□□ -0.64
HDAC9-229ENST00000622668 ERICH2A1L162 156 aa11.06□□□□□ -0.64
HDAC9-229ENST00000622668 NFXL1Q6ZNB6 911 aa11.06□□□□□ -0.64
HDAC9-229ENST00000622668 RALYLQ86SE5 291 aaKnown RBP11.06□□□□□ -0.64
HDAC9-229ENST00000622668 RASSF8Q8NHQ8 419 aa11.06□□□□□ -0.64
HDAC9-229ENST00000622668 ZNF526Q8TF50 670 aaPredicted RBP11.06□□□□□ -0.64
HDAC9-229ENST00000622668 ARHGAP27Q6ZUM4 889 aa11.05□□□□□ -0.64
HDAC9-229ENST00000622668 DZIP1Q86YF9 867 aaKnown RBP11.05□□□□□ -0.64
HDAC9-229ENST00000622668 SSH1Q8WYL5 1049 aa11.05□□□□□ -0.64
HDAC9-229ENST00000622668 ANO2Q9NQ90 1003 aa11.05□□□□□ -0.64
HDAC9-229ENST00000622668 F8W031 263 aaPredicted RBP11.05□□□□□ -0.64
HDAC9-229ENST00000622668 GOLGA6L22H0YM25 854 aa11.05□□□□□ -0.64
HDAC9-229ENST00000622668 RIMBP2O15034 1052 aa11.05□□□□□ -0.64
HDAC9-229ENST00000622668 AACSQ86V21 672 aa11.05□□□□□ -0.64
HDAC9-229ENST00000622668 ZNF496Q96IT1 587 aaPredicted RBP11.05□□□□□ -0.64
HDAC9-229ENST00000622668 ERBB3P21860 1342 aa11.05□□□□□ -0.64
HDAC9-229ENST00000622668 PTPRTO14522 1441 aa11.05□□□□□ -0.64
HDAC9-229ENST00000622668 ZKSCAN1P17029 563 aaPredicted RBP11.05□□□□□ -0.64
HDAC9-229ENST00000622668 SLC52A2Q9HAB3 445 aa11.05□□□□□ -0.64
HDAC9-229ENST00000622668 FANCIQ9NVI1 1328 aa11.05□□□□□ -0.64
HDAC9-229ENST00000622668 LMOD1P29536 600 aaPredicted RBP11.04□□□□□ -0.64
HDAC9-229ENST00000622668 CHMP4CQ96CF2 233 aa11.04□□□□□ -0.64
HDAC9-229ENST00000622668 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.04□□□□□ -0.64
HDAC9-229ENST00000622668 HTATSF1O43719 755 aaKnown RBP11.04□□□□□ -0.64
HDAC9-229ENST00000622668 KRT24Q2M2I5 525 aa11.04□□□□□ -0.64
HDAC9-229ENST00000622668 HSCBQ8IWL3 235 aa11.04□□□□□ -0.64
HDAC9-229ENST00000622668 ANP32BQ92688 251 aaKnown RBP11.04□□□□□ -0.64
HDAC9-229ENST00000622668 ASAP1Q9ULH1 1129 aa11.04□□□□□ -0.64
HDAC9-229ENST00000622668 CT47B1P0C2W7 299 aaPredicted RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms